DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dfd and lum

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001011006.1 Gene:lum / 496415 XenbaseID:XB-GENE-1004934 Length:353 Species:Xenopus tropicalis


Alignment Length:26 Identity:10/26 - (38%)
Similarity:10/26 - (38%) Gaps:12/26 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly   209 GYYGGYGG------------GYGTAN 222
            ||.|||.|            |..|||
 Frog    24 GYDGGYAGPEGDYYVSSLSLGPSTAN 49

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475
lumNP_001011006.1 PRK15370 <56..>256 CDD:185268
leucine-rich repeat 81..104 CDD:275380
leucine-rich repeat 105..130 CDD:275380
leucine-rich repeat 131..151 CDD:275380
leucine-rich repeat 152..175 CDD:275380
leucine-rich repeat 176..200 CDD:275380
leucine-rich repeat 201..221 CDD:275380
leucine-rich repeat 222..245 CDD:275380
PLN03150 <235..>307 CDD:178695
leucine-rich repeat 246..270 CDD:275380
leucine-rich repeat 271..294 CDD:275380
leucine-rich repeat 295..320 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 113 1.000 Domainoid score I6065
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 1 1.000 - - otm47668
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.900

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