DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dfd and hoxc8

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001006787.1 Gene:hoxc8 / 448482 XenbaseID:XB-GENE-480999 Length:242 Species:Xenopus tropicalis


Alignment Length:166 Identity:56/166 - (33%)
Similarity:90/166 - (54%) Gaps:39/166 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   311 PDELGSNDNDDDLGDSDSDEDLMAETTDGERIIYPWMKKIHVAGVANGSYQPGMEPKRQRTAYTR 375
            ||...|::.:...|....:::      ....:::|||:. |..|..:|           |..|:|
 Frog   112 PDCKSSSNTNTSEGQGHLNQN------SSPSLMFPWMRP-HAPGRRSG-----------RQTYSR 158

  Fly   376 HQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKKDN---KLPNTKNVRKKT 437
            :|.|||||||.:|.||||:||||::|.|.|:|||:|||||||||||||:|   |||..::..|..
 Frog   159 YQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLPGARDEEKTE 223

  Fly   438 VDANGNPTPVAKKPTKRAASKKQQQAQQQQQSQQQQ 473
            .:.|                  :::.:::::|::.:
 Frog   224 EEGN------------------EEEEKEEEESKESK 241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 36/51 (71%)
hoxc8NP_001006787.1 Homeobox 153..206 CDD:365835 37/52 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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