DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dfd and Ptx1

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001138130.2 Gene:Ptx1 / 43664 FlyBaseID:FBgn0020912 Length:610 Species:Drosophila melanogaster


Alignment Length:700 Identity:136/700 - (19%)
Similarity:193/700 - (27%) Gaps:321/700 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 MTASTGHMSGAVG--------------GGAGVGSVGGGGAG-GMTGHPHSMHPADMVSDYMAHHH 94
            ::|.|.:.:|:.|              |..|..:|.|||:. ..|.|.||             ||
  Fly    64 VSAGTANGAGSAGSAESATTTSTALSSGSTGSSTVNGGGSSTSGTEHLHS-------------HH 115

  Fly    95 NPHSHSHSHTHSLPHHHSNSAISG----HHQAS---AGGYSSNYANATPPSHPHSH----PHAHP 148
            :.|..|.|.:.| |...|...||.    ||.|.   .||||         .||| |    ||...
  Fly   116 SLHDSSSSVSIS-PAISSLMPISSLSHLHHSAGQDLVGGYS---------QHPH-HTVVPPHTPK 169

  Fly   149 HQSLGYYVHHAPEFISAGAVHSDPTNGYGPAANVPNTSNGGGGGGSGAVLGGGAVGGSANGYYGG 213
            |:.|        |.:...|...|..:.:.....|.|                             
  Fly   170 HEPL--------EKLRIWAETGDFRDSHSSMTAVAN----------------------------- 197

  Fly   214 YGGGYGTANGSVGSTHSQGHSPHSQMMDLPLQCSSTEPPTNTALGLQELGLKLEKRIEEAVPAGQ 278
                      |:.|||...           .|.|||...:|.:                      
  Fly   198 ----------SLDSTHLNN-----------FQTSSTSSISNRS---------------------- 219

  Fly   279 QLQELGMRLRCDDMGSENDDMSEEDRLMLDRSPDELGSNDNDDDLGDSDSDEDLMAETTDGERII 343
                                   .||...:||.:|  :....:::..|..||.:   ||.||   
  Fly   220 -----------------------RDRKDGNRSVNE--TTIKTENISSSGHDEPM---TTSGE--- 253

  Fly   344 YPWMKKIHVAGVANGSYQPGMEPK---------RQRTAYTRHQILELEKEFHYNRYLTRRRRIEI 399
                                 |||         ||||.:|..|:.|||..|..|||.....|.||
  Fly   254 ---------------------EPKNDKKNKRQRRQRTHFTSQQLQELEHTFSRNRYPDMSTREEI 297

  Fly   400 AHTLVLSERQIKIWFQNRRMKWKKDNKLPNTKNVRKKTVDANGN--------------------- 443
            |....|:|.::::||:|||.||:|..:  |..|......|....                     
  Fly   298 AMWTNLTEARVRVWFKNRRAKWRKRER--NAMNAAVAAADFKSGFGTQFMQPFADDSLYSSYPYN 360

  Fly   444 -----PTPVAKKP---------TKRAASKKQ-----------------QQAQQQQQSQQQQTQQT 477
                 |:|:..||         :..|.:..|                 ..|.....|.......|
  Fly   361 NWTKVPSPLGTKPFPWPVNPLGSMVAGNHHQNSVNCFNTGASGVAVSMNNASMLPGSMGSSLSNT 425

  Fly   478 -----------------PVM-----NECIRSDSLESIGDV--------SSSLGNPPYIPAAPETT 512
                             |.|     ..|:.|....||..:        |:..|: ||...:|.:.
  Fly   426 SNVGAVGAPCPYTTPANPYMYRSAAEPCMSSSMSSSIATLRLKAKQHASAGFGS-PYSAPSPVSR 489

  Fly   513 SSYPGSQ-----------------------------QHLSNNNNNGSGNNNNNNNNNNSNLNNNN 548
            |:..|..                             ||.|..:..|||..|....::.:.|:::|
  Fly   490 SNSAGLSACQYTGVGVTDVVXENALGALLNQHQHHLQHFSGGSVGGSGVPNGMQQHSGNMLHHSN 554

  Fly   549 ----------------NNNQMGHTNLHGHLQQQQSDLMTNLQLHIKQDYD 582
                            |:...|:.:|.|..:......:.|...:...|.|
  Fly   555 LGLDHSDLGLVGGGPSNHQDEGNHSLEGSNKSPMEAPLANSSNNNNNDND 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 23/51 (45%)
Ptx1NP_001138130.2 Homeobox 268..320 CDD:278475 23/51 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 45 1.000 Domainoid score I3555
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.910

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