DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dfd and lab

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster


Alignment Length:557 Identity:136/557 - (24%)
Similarity:184/557 - (33%) Gaps:207/557 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 YPHAPHHVQSPMSMGNGLDPKFPPLADD--YHHYN---GHYSMTA--STG---HMSGAVGGGAGV 62
            |....|...:|..:....||........  :||..   |.|::.|  |.|   ||.         
  Fly   235 YAAVLHASYAPGMVLEDQDPMMQQATQSQMWHHQQHLAGSYALDAMDSLGMHAHMH--------- 290

  Fly    63 GSVGGGGAGGMTGHPHSMHPADMVSDYMAHHHNPHSHSHS-HTHSLPHHHSNSAISGHHQASAGG 126
            ..:..|..|.:..:||...|.........|....|..:.| ..|...|.:|.|...|.::...||
  Fly   291 HGLPHGHLGNLANNPHQQQPQVQQQQQQPHQQPQHPQNQSPAAHQQHHQNSVSPNGGMNRQQRGG 355

  Fly   127 Y------SSNYANATPPSHPHSHPHAHPHQSLGYYVH------------HAPEFISAG--AVHSD 171
            .      :|:..:|:..:||.|.....|:.|.....:            .||:..::|  ::|..
  Fly   356 VISPGSSTSSSTSASNGAHPASTQSKSPNHSSSIPTYKWMQLKRNVPKPQAPKLPASGIASMHDY 420

  Fly   172 PTNGYGPAANVPNTSNGGGGGGSGAVLGGGAVGGSANGYYGGYGGGYGTAN--------GSVGST 228
            ..||.      .:...||||||||  :|.|.||...|| ..|.||.....|        .:.||.
  Fly   421 QMNGQ------LDMCRGGGGGGSG--VGNGPVGVGGNG-SPGIGGVLSVQNSLIMANSAAAAGSA 476

  Fly   229 HSQGHSPHSQMMDLPLQCSSTEPPTNTALGLQELGLKLEKRIEEAVPAGQQLQELGMRLRCDDMG 293
            |                      |....:||               .:|..|             
  Fly   477 H----------------------PNGMGVGL---------------GSGSGL------------- 491

  Fly   294 SENDDMSEEDRLMLDRSPDELGSNDNDDDLGDSDSDEDLMAETTDGERIIYPWMKKIHVAGVANG 358
                            |...|.||.|:..                                    
  Fly   492 ----------------SSCSLSSNTNNSG------------------------------------ 504

  Fly   359 SYQPGMEPKRQRTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKK 423
                       ||.:|..|:.|||||||:||||||.||||||:||.|:|.|:||||||||||.| 
  Fly   505 -----------RTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQK- 557

  Fly   424 DNKLPNTKNVRKKTVDANGNPTPVAKKPTKRAASKKQQQAQQQQQSQQQQTQQTPVMNECIRSDS 488
                   |.|::..:     |..:.   |:.:.|...::..||||.|..:.|             
  Fly   558 -------KRVKEGLI-----PADIL---TQHSTSVISEKPPQQQQPQPPELQ------------- 594

  Fly   489 LESIGDVSSSLGNPPYIPAAPET-----TSSYPGSQQ 520
            |:|.|   |.||.......||.|     |.:.|.|:|
  Fly   595 LKSQG---SDLGGNELATGAPSTPTTAMTLTAPTSKQ 628

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 38/51 (75%)
labNP_476613.1 Homeobox 505..557 CDD:278475 38/51 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439740
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 1 0.900 - - E2759_KOG0489
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D858478at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.750

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