Protein Alignment Dfd and cdx1a

DIOPT Version :9

• Sequence 1: NP_477201.1
• Gene: Dfd / 40832
• FlyBaseID: FBgn0000439
• Length: 586
• Species: Drosophila melanogaster
• Sequence 2: NP_998001.2
• Gene: cdx1a / 405762
• ZFINID: ZDB-GENE-050510-1
• Length: 228
• Species: Danio rerio
• Alignment Length: 385
• Identity: 88/385 - (22%)
• Similarity: 125/385 - (32%)
• Gaps: 184/385 - (47%)

  Fly   126 GYSSNYANATPPSHPHSHPHA--------HPHQSLGYYVHHAPEFISAGAVHSDPTNGYGPAANV 182
            |..:.:.|.:.| |.:.:|.|        ||..:||..:||         ..|..:.|:||
Zfish    13 GNPARHLNLSQP-HLNVYPSAPYPDYSGYHPGPALGNDLHH---------TGSSWSPGFGP---- 63

  Fly   183 PNTSNGGGGGGSGAVLGGGAVGGSANGYYGGYGGGYGTANGSVGSTHSQGHSPHSQMMDLPLQCS 247
                                  ||.:.:...||             |..|||
Zfish    64 ----------------------GSRDDWPPLYG-------------HGTGHS------------- 80

  Fly   248 STEPPTNTALGLQELGLKLEKRIEEAVPAGQQLQELGMRLRCDDMGSENDDMSEEDRLMLDRSPD 312
                                      :||.               |.|...:...|:.:|..:|
Zfish    81 --------------------------LPAN---------------GVEVSVLPSVDQGLLSGAP- 103

  Fly   313 ELGSNDNDDDLGDSDSDEDLMAETTDGERIIYPWMKKIHVAGVANGSYQPGMEPK---RQRTAYT 374
                       .|.:..:|              ||::..|      ...||.:.:   :.|..|:
Zfish   104 -----------VDREEPQD--------------WMRRSAV------PTNPGGKTRTKDKYRVVYS 137

  Fly   375 RHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKKDNKLPNTKNVRKKTVD 439
            ..|.||||||||::||:|.||:.|:|.||.|||||:||||||||.|.:|.||
Zfish   138 DVQRLELEKEFHFSRYITIRRKAELAGTLNLSERQVKIWFQNRRAKERKMNK------------- 189

  Fly   440 ANGNPTPVAKKPTKRAASKKQQQAQQQQQSQQQQTQQTPVMNECIRSDSLESIGDVSSSL 499
                                 ::.||.|||.......|.|.:    |||.....::|||:
Zfish   190 ---------------------KRLQQVQQSSSGLANTTTVSS----SDSGLMTDNISSSI 224

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Dfd	NP_477201.1	Homeobox	370..422	CDD:278475	34/51 (67%)
cdx1a	NP_998001.2	Caudal_act	11..115	CDD:282574	35/230 (15%)
		COG5576	<122..227	CDD:227863	52/141 (37%)
		Homeobox	133..185	CDD:278475	34/51 (67%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.910