DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dfd and Rx

DIOPT Version :10

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster


Alignment Length:509 Identity:109/509 - (21%)
Similarity:162/509 - (31%) Gaps:177/509 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSFLMGY-------PHAPHHVQSPMSMGNGLDPKFPPLADDYHHYNGHYSMTASTGHMSGAVGG 58
            |:|.|..:       |:.|     |...| |..|:.|. |...||                    
  Fly   205 MASMLQQHAKNGGALPYGP-----PTPPG-GQQPQVPN-ATPLHH-------------------- 242

  Fly    59 GAGVGSVGGGGAGGMTGHPHSMHPADMVSDYMAHHHNPHSHSHSHTHSLPHHHSNSAISGHHQAS 123
                    |...||..||.               .|..|.|        |.||.::.. |:|.|.
  Fly   243 --------GQQMGGQAGHA---------------THAGHGH--------PTHHGHAPF-GYHNAF 275

  Fly   124 AGGYSSNYANATPPSHPHSHPHAHPHQSLGYYVHHAPEFISAGAVHSDPTNGYGPAANVPNTSNG 188
            ..|..             .|.:.||.::.|.|::...:.:.|..:.:.......|.|.:|.:|.|
  Fly   276 GFGQG-------------GHGYGHPEEAAGNYLNSMHQMVEANQLQTGANGANPPPAPLPPSSFG 327

  Fly   189 GGGGGSGAVLGGGAVGGSANGYYG-----GYG-----GGYGTANGSVGSTHSQ---GHSPHSQMM 240
            .......|:........:.:..|.     |.|     |.|...:.:.....||   .....|...
  Fly   328 SHQQHLAALAAQAQEQQNQHSKYAKSSPTGAGPPPPPGAYFMESQTAPVAPSQINYDERSMSSAS 392

  Fly   241 DL--------PLQCSSTEPPTNTALGLQELGLKLE-----------KRIEEAVPAG--------- 277
            ||        .||...|.|||.:..|  :|..|.:           |.....:|.|         
  Fly   393 DLEEDDDDAAKLQLDVTSPPTPSPRG--QLAAKRKSAGVFCDDNEPKLANGQLPGGNYGIRPRSM 455

  Fly   278 -------------------QQLQELGMR------LRCDDMGSENDDMSEED---RLMLDRSPDEL 314
                               ||.|:|..:      .|....|:.|.:.:..|   ||..|......
  Fly   456 EEVHHQQQSHHHQQQQQQQQQQQQLQQQQGFQHDFRNSGNGNPNGNSNSGDHGERLNADSDSLVN 520

  Fly   315 GSNDNDDDLGDSDSDEDLMAETTDGERIIYPWMKKIHVAGVANGSYQPGMEP-------KRQRTA 372
            ||..:.:||..::|.|       .||:|             .:||...|.:.       :|.||.
  Fly   521 GSCASSEDLNQTNSSE-------QGEKI-------------TSGSDDEGQDDNCAKKKHRRNRTT 565

  Fly   373 YTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKKDNK 426
            :|.:|:.|||:.|..:.|.....|.|:|..:.|.|.::::||||||.||::..|
  Fly   566 FTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeodomain 367..423 CDD:459649 23/55 (42%)
RxNP_726006.3 Homeodomain 560..616 CDD:459649 23/55 (42%)
OAR 876..892 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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