DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dfd and Lim3

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster


Alignment Length:597 Identity:117/597 - (19%)
Similarity:169/597 - (28%) Gaps:242/597 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 HHHNPHSHSHSH-THSLPHHHSN-----------SAISGHHQASAGGYSSNYANATPPSHPHSHP 144
            |||:.|.|...| ....||.|..           ||:..|.|                ..||.|.
  Fly    12 HHHHQHQHQLQHPPQQQPHPHQQLQHPLQQQQHLSAMDNHQQ----------------HQPHIHQ 60

  Fly   145 HAHPHQSLGYYVHHAPEFISAGAVHSDPTNGYGPAANVPNTSNGGGGGGSGAVLGGGAVGGSANG 209
            .....|.|                  .||         |..|:              .||     
  Fly    61 QQQQQQQL------------------PPT---------PQASH--------------LVG----- 79

  Fly   210 YYGGYGGGYGTANGSVGSTHSQGHSPHSQMMDLPLQCSSTEPPTNTALGLQELGLKLEKRIEEAV 274
                            |....|.|..|:.     |.....:|.....|.|    :...:.:|..:
  Fly    80 ----------------GQQQQQQHPHHNH-----LAVDQDDPNPELVLAL----ISRNRALEATI 119

  Fly   275 PAGQQLQEL---------------GMRLRCDDM-GSENDD--------MSEED---RLMLDRSPD 312
            |......||               ...|:|.:. |..||.        ..:||   |.....|..
  Fly   120 PKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSAC 184

  Fly   313 ELG---------SNDNDDDLGD----------SDSDEDLMAETTDGERIIYPWMKKIHVAGVANG 358
            ::|         :.||...|..          :..||..:.|   ..::|   .|:.:....|.|
  Fly   185 DMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLME---DRKLI---CKRDYEEAKAKG 243

  Fly   359 SYQPGM----EP-KRQRTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRR 418
            .|..|.    :| ||.||..|..|:..|:..::.:....|..|.:::....|..|.:::||||||
  Fly   244 LYLDGSLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRR 308

  Fly   419 MKWKKDNKLPNTKNVRKKTVDANGNPTPVAKKPTKRAASKKQQQAQQQQQSQQQQTQQTPVMNEC 483
            .|.|:..|........:......||.:|    .|.:...|.:.:......|...           
  Fly   309 AKEKRLKKDAGRTRWSQYFRSMKGNCSP----RTDKFLDKDELKVDYDSFSHHD----------- 358

  Fly   484 IRSDSLESIG------------------DVSSSLGNPPYIPAAP-----ETTSSYP--------- 516
            :.:||..::.                  ..||....||...:.|     .|..|||         
  Fly   359 LSNDSYSTVNLGLDEGASPHSIRGSYMHGSSSPSQYPPSSRSPPPVGQGHTFGSYPDNIVYTNID 423

  Fly   517 ---GSQQHLS------NNNNN--------------------------GSGNNN----NNNNNNNS 542
               ||..|.|      :::||                          .||:.|    |||.||||
  Fly   424 QAVGSSLHASKAHHRLHSSNNVSDLSNDSSPDQGYPDFPPSPDSWLGDSGSTNTTSANNNANNNS 488

  Fly   543 NLNNNNNNNQMG 554
            :.::||||:..|
  Fly   489 SSSHNNNNSSGG 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 16/51 (31%)
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 8/50 (16%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 10/60 (17%)
Homeobox 259..312 CDD:278475 16/52 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 45 1.000 Domainoid score I3555
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.000

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