DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dfd and hoxc3a

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001128157.2 Gene:hoxc3a / 30421 ZFINID:ZDB-GENE-980526-532 Length:263 Species:Danio rerio


Alignment Length:253 Identity:77/253 - (30%)
Similarity:118/253 - (46%) Gaps:47/253 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 LKLEKRIEEAVPAGQQLQEL----GMRLR-----------CDDMGSEND--DMSEEDRLMLDRSP 311
            |:|:.|:.:|:..|..:..|    |.:|:           .::..||||  ::.....|...:.|
Zfish    22 LQLKHRVRKAIGGGHHVTTLFTLVGKQLKTRENSSTWKRHAEESSSENDKGNVWNFQNLSNVQHP 86

  Fly   312 DELGSNDNDDDLGDSDSDEDLMA---ETTDGERIIYPWMKKIH-------VAGVANG--SYQPG- 363
            ... |:|.:..|..:::.|...|   .|:....:.||||::.|       :..:.:|  .|..| 
Zfish    87 YSF-SDDGNHSLDPANALEREKACELSTSCLSTMKYPWMRETHAPTHFSSINAMESGDSKYSNGE 150

  Fly   364 -----MEPKRQRTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKK 423
                 ...||.|.|:|..|:||||||||::.||.|.||:|:|..|.|::|||||||||||||:||
Zfish   151 AVVRNSSSKRARVAFTSSQLLELEKEFHFSAYLCRNRRLEMAELLKLTDRQIKIWFQNRRMKYKK 215

  Fly   424 DNKLPNTKNVRKKTVDANGNPTPVAKKPTKRAASKKQQQAQQQQQSQQQQTQQTPVMN 481
            |:|..:|.......:.....|..:::..|......|           .|...:||.||
Zfish   216 DHKEKSTAKSSYTYLGTENQPLIISRSTTDSPVPLK-----------FQNNYETPSMN 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 34/51 (67%)
hoxc3aNP_001128157.2 Abdominal-A 123..246 CDD:332641 49/122 (40%)
Homeobox 162..214 CDD:306543 34/51 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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