DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dfd and hoxb3a

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_571192.2 Gene:hoxb3a / 30339 ZFINID:ZDB-GENE-990415-104 Length:417 Species:Danio rerio


Alignment Length:525 Identity:126/525 - (24%)
Similarity:174/525 - (33%) Gaps:197/525 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 PHHHSNSAISGHHQASAGGYSSNYANATP-PSHPHS--------HPHAHPHQSLGYYVHHAPEFI 163
            |...:::.:.|.:|.||....|...:|.| |.|..:        .|...|.       ||.|..:
Zfish    31 PAFQNSAHLEGDYQRSACSLQSLGTSAPPQPQHAKTKELNGSCMRPSLPPE-------HHPPPQV 88

  Fly   164 SAGAVHSDPTNGYGPAANVPNTSNGGGGGGSGAVLGGGAVGGSANGYYGGYGGGYGTANGSVGST 228
                  |.|.|....||.  |.:...||.|.|.|.|.|                 ||:..|    
Zfish    89 ------SPPQNTVNVAAT--NATQQPGGSGGGGVAGSG-----------------GTSKSS---- 124

  Fly   229 HSQGHSPHSQMMDLPLQCSSTEPPTNTALGLQELGLKLEKRIEEAVPAGQQLQELGMRLRCDDMG 293
                 |..|.|        :|.|             .|.|:|                       
Zfish   125 -----SKSSSM--------ATNP-------------TLTKQI----------------------- 140

  Fly   294 SENDDMSEEDRLMLDRSPDELGSNDNDDDLGDSDSDEDLMAETTDGERIIYPWMKKIHVAGVANG 358
                            .|....|..|......|.|.....||::.||:                 
Zfish   141 ----------------FPWMKESRQNTKQKNSSPSASSANAESSGGEK----------------- 172

  Fly   359 SYQPG-MEPKRQRTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWK 422
             ..|| ...||.|||||..|::|||||||:||||.|.||:|:|:.|.||||||||||||||||:|
Zfish   173 -SPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYK 236

  Fly   423 KDNKLPNTKNVRKKTVDANGNPTPVAKKPTKRAAS----------------------KKQQQAQQ 465
            ||.|       .|....::|.|:|....|....:|                      |..|.|..
Zfish   237 KDQK-------SKGIGSSSGGPSPTGSPPLPMQSSAGFMNSMHSMGSYDAPSPPSFNKPHQNAYA 294

  Fly   466 QQQSQQQQTQQTPVMNECIRSDSLESIGDV------------SSSLGNP-----------PYIPA 507
            ...:.|...:..|..         :..|:.            |.:.|.|           .|:.|
Zfish   295 MSTAYQNPMKGCPPQ---------QKYGNTPPDYDPHGLQGNSGNYGTPNMQGSPVYVGGNYVDA 350

  Fly   508 APETTSSYPGSQQHLSNNNNNGSGNNNNNNNNNNSNLNNNNNNNQMGHTNLHGHLQQ----QQSD 568
            .|.|..|..| ..||.::.:  :..:.|.....::|.::...:....:|:|..|...    |::.
Zfish   351 MPATGPSMYG-LNHLPHHQS--ASMDYNGATQMSANQHHGPCDPHPTYTDLSAHHPSQGRIQEAP 412

  Fly   569 LMTNL 573
            .:|:|
Zfish   413 KLTHL 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 39/51 (76%)
hoxb3aNP_571192.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 51..135 31/145 (21%)
Antp-type hexapeptide 140..145 2/43 (5%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 147..184 12/54 (22%)
Homeobox 184..236 CDD:278475 39/51 (76%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 237..290 10/59 (17%)
DUF4074 353..415 CDD:290032 11/64 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 381..417 6/35 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 134 1.000 Inparanoid score I4567
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.860

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