DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dfd and hoxb1a

DIOPT Version :10

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_571190.2 Gene:hoxb1a / 30337 ZFINID:ZDB-GENE-990415-101 Length:316 Species:Danio rerio


Alignment Length:432 Identity:103/432 - (23%)
Similarity:146/432 - (33%) Gaps:156/432 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 NGLDPKFPPLADDYHHYNGHYSMTASTGHMSGAVGGGAGVGSVGGGGAGGMTGHPHSMHPADMVS 87
            |...||     ..|||.:..:.....|||.|.:.... |...|||           |..|....:
Zfish    20 NAYSPK-----AGYHHLDQAFPGPFHTGHASDSYNAD-GRLYVGG-----------SNQPPTAAA 67

  Fly    88 DYMAHHHNPHSHSHSHTHSLPHHHSNSAISGHHQASAGGYSSNY-----ANATPPSHPHSHPHAH 147
                        .|.|.:.:..||.:...:|......|..:::|     ||:....|.:   ..:
Zfish    68 ------------QHQHQNGIYAHHQHQNQTGMGLTYGGTGTTSYGTQACANSDYAQHQY---FIN 117

  Fly   148 PHQSLGYYVHHAPEFISAGAVHSDPTNGYGPAANVPNTSNGGGGGGSGAVLGGGAVGGSANGYYG 212
            |.|. |.|.|               ::|:       :|||                   |:.:||
Zfish   118 PEQD-GMYYH---------------SSGF-------STSN-------------------ASPHYG 140

  Fly   213 GYGGGYGTANGSVGSTHSQGHSPHSQMMDLPLQCSSTEPPTNTALGLQELGLKLEKRIEEAVPAG 277
            ...|.|..|.|:|.:...|.|.           |.                             |
Zfish   141 SMAGAYCGAQGAVPAAPYQHHG-----------CE-----------------------------G 165

  Fly   278 QQLQELGMRLRCDDMGSENDDMSEEDRLMLDRSPDELGSNDNDDDLGDSDSDEDLMAETTDGERI 342
            |..|      |....|:..|..:.:..                    :.|:|:....:|.|    
Zfish   166 QDHQ------RAYSQGTYADLSASQGT--------------------EKDTDQPPPGKTFD---- 200

  Fly   343 IYPWMKKIHVAGVANGSYQPGMEPKRQ-RTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLS 406
               |||............:.|:.|:.. ||.:|..|:.|||||||:::||||.||:|||.||.|:
Zfish   201 ---WMKVKRNPPKTGKVAEYGLGPQNTIRTNFTTKQLTELEKEFHFSKYLTRARRVEIAATLELN 262

  Fly   407 ERQIKIWFQNRRMKWKKDNK---LPNTKNVRKKTVDANGNPT 445
            |.|:||||||||||.||..|   .|.:....|...|.:.:.|
Zfish   263 ETQVKIWFQNRRMKQKKREKEGLAPASSTSSKDLEDQSDHST 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeodomain 367..423 CDD:459649 35/56 (63%)
hoxb1aNP_571190.2 Homeodomain 226..279 CDD:459649 35/52 (67%)

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