DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dfd and Gsx1

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001178592.1 Gene:Gsx1 / 288457 RGDID:1310020 Length:261 Species:Rattus norvegicus


Alignment Length:86 Identity:47/86 - (54%)
Similarity:58/86 - (67%) Gaps:3/86 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   345 PWMKKIHVAGVANGSYQ-PGMEPKRQRTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSER 408
            |..::.|...|.:.|.| |  ..||.|||:|..|:||||:||..|.||:|.||||||..|.|||:
  Rat   126 PDPRQFHCISVDSSSNQLP--SSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEK 188

  Fly   409 QIKIWFQNRRMKWKKDNKLPN 429
            |:||||||||:|.||:.|..|
  Rat   189 QVKIWFQNRRVKHKKEGKGSN 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 35/51 (69%)
Gsx1NP_001178592.1 Homeobox 150..202 CDD:278475 35/51 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 127 1.000 Inparanoid score I4588
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.950

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