DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dfd and Hoxd3

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001257967.1 Gene:Hoxd3 / 288152 RGDID:1588601 Length:432 Species:Rattus norvegicus


Alignment Length:469 Identity:114/469 - (24%)
Similarity:161/469 - (34%) Gaps:169/469 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 GGYSSNYANATPPSHPHSHPHAHPHQSLGYYVHHAPEFISAGAVHSD-PTNGYGPAANVPNTSNG 188
            |||  .|:.||     .::.::.|||..       |...:|.::.|| |::    |.::.:::..
  Rat    30 GGY--GYSKAT-----DAYGYSTPHQPY-------PPPAAANSLDSDYPSS----ACSIQSSAPL 76

  Fly   189 GGGGGSGAVLGGGAVGGSANGYYGGYGGGYGTANGSVG-STHSQGHSPHSQMMDLPLQCSSTEPP 252
            ......||.|.|..:........||.||     |...| ::..|...|......||     ...|
  Rat    77 RAPAHKGAELNGSCMRPGTGNSQGGGGG-----NQPPGLNSEQQPPQPPPPPPTLP-----PSSP 131

  Fly   253 TNTALGLQELGLKLEKRIEEAVPAGQQLQELGMRLRCDDMGSENDDMSEEDRLMLDRSPDELGSN 317
            ||...|               |||.:            ..|..|                     
  Rat   132 TNPGSG---------------VPAKK------------TKGGPN--------------------- 148

  Fly   318 DNDDDLGDSDSDEDLMAETTDGERIIYPWMKKIHVAGVANGS-----------YQPGMEPKRQRT 371
                   .|.|...:..:       |:||||:.........|           ..||...||.||
  Rat   149 -------ASSSSSTISKQ-------IFPWMKESRQNSKQKNSCATSGENCEDKSPPGPASKRVRT 199

  Fly   372 AYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKKDNKLPNTKNVRKK 436
            |||..|::|||||||:||||.|.||:|:|:.|.|:||||||||||||||:|||.|       .|.
  Rat   200 AYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK-------AKG 257

  Fly   437 TVDANGNPTPVAKKPTKRAASKKQQQAQ------------------QQQQSQQQQTQQTPVMNEC 483
            .:.:....:|....|...||.......|                  :.|.:.......|..::.|
  Rat   258 ILHSPAGQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLSSC 322

  Fly   484 IRSDSLESI-------------GDVSSSL-GNPPYI---------PAA-----------PETTS- 513
            :......:.             |..|::| |:|.|:         ||:           |.:.| 
  Rat   323 LPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGGNFVDSMAPASGPVFNLGHLSHPSSASV 387

  Fly   514 ------SYPGSQQH 521
                  ..||:..|
  Rat   388 DYSCAAQIPGNHHH 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 38/51 (75%)
Hoxd3NP_001257967.1 Homeobox 198..251 CDD:395001 38/52 (73%)
DUF4074 369..430 CDD:404218 6/33 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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