Protein Alignment Dfd and Hoxd1

DIOPT Version :9

• Sequence 1: NP_477201.1
• Gene: Dfd / 40832
• FlyBaseID: FBgn0000439
• Length: 586
• Species: Drosophila melanogaster
• Sequence 2: NP_001099354.1
• Gene: Hoxd1 / 288151
• RGDID: 1309179
• Length: 328
• Species: Rattus norvegicus
• Alignment Length: 461
• Identity: 100/461 - (21%)
• Similarity: 148/461 - (32%)
• Gaps: 186/461 - (40%)

  Fly    45 MTASTGHMSGAVGGGAGVGSVGGGGAG------GMTGHPHSMHPADMVSDYMAHHHNPHSHSHSH 103
            |::...::|.|.|||:  |.|||...|      .....|.::.||..:.          |...:.
  Rat     1 MSSYLEYVSCAAGGGS--GGVGGDVLGFAPKFCRADARPVALQPAFPLG----------SGDGAF 53

  Fly   104 THSLPHHHSNSAISGHHQASAGGYSSNYANATPPSHPHSHPHAHPHQSLGYYVHHAPEFISA--- 165
            ...||                  .::.....:||..|...|...|..|     .:||..:..
  Rat    54 VSCLP------------------LAAARPTPSPPVAPAQPPGPQPAAS-----RYAPCTLEGAYE 95

  Fly   166 -GAVHSDPTN----GYGPAANVPNTSNGGGGGGSGAVLGGGAVGGSA--NGYYGGY-------GG 216
             ||..:....    |.|||.:.|                 ||:|.:|  :|.:..|       .|
  Rat    96 RGAAPASAAEYGFLGSGPAFDFP-----------------GALGRAADDSGPHVHYATSAVFSSG 143

  Fly   217 GYGTANGSVG--------------STHSQGH-SPHSQMMDLPLQCSSTEPPTNTALGLQELGLKL 266
            |....:|.|.              ...:.|| .|...:...|..|.....||:   ||.......
  Rat   144 GSFLLSGQVDFAAFAEPGPFPACLKEPADGHPGPFQTVSPAPGACPKPASPTS---GLPAAHSTF 205

  Fly   267 E-KRIEEAVPAGQQLQELGMRLRCDDMGSENDDMSEEDRLMLDRSPDELGSNDNDDDLGDSDSDE 330
            | .:::...|...:|.|.|
  Rat   206 EWMKVKRNAPKKSKLSEYG---------------------------------------------- 224

  Fly   331 DLMAETTDGERIIYPWMKKIHVAGVANGSYQPGMEPKRQRTAYTRHQILELEKEFHYNRYLTRRR 395
                .|:....|                           ||.::..|:.|||||||:|:||||.|
  Rat   225 ----ATSPSSAI---------------------------RTNFSTKQLTELEKEFHFNKYLTRAR 258

  Fly   396 RIEIAHTLVLSERQIKIWFQNRRMKWKKDNK--------------LPNTKNVRKKTVDANGNPTP 446
            |:|||:.|.|::.|:||||||||||.||..:              ||.::....|:....|:|:.
  Rat   259 RMEIANCLQLNDTQVKIWFQNRRMKQKKREREGLLATAASVASLQLPGSETSPIKSGRNLGSPSQ 323

  Fly   447 VAKKPT 452
             |::|:
  Rat   324 -AQEPS 328

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Dfd	NP_477201.1	Homeobox	370..422	CDD:278475	33/51 (65%)
Hoxd1	NP_001099354.1	COG5576	<208..325	CDD:227863	46/194 (24%)
		Homeobox	233..285	CDD:278475	33/51 (65%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.810