DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dfd and tlx3b

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_739572.1 Gene:tlx3b / 266965 ZFINID:ZDB-GENE-021021-1 Length:300 Species:Danio rerio


Alignment Length:397 Identity:90/397 - (22%)
Similarity:131/397 - (32%) Gaps:139/397 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 PPSHPH-----SHPHAHPHQSLGYYVHHAPEFISAGAVHSDPTNGYGPAANVPNTSNGGGGGGSG 195
            |.|.|.     |.|..|...|.|.      :.|.:|   :|..:......|...:|:|......|
Zfish     5 PSSSPSGTSQTSQPTQHEPISFGI------DQILSG---TDQESQQNSTRNSSESSSGSSSASGG 60

  Fly   196 AVLGGGAVGGSANGYYGGYGGGYGTANGSVGSTHSQGHSPHSQMMDL------------PLQCSS 248
            ....|...|.||..|....|..:|.|      ...:..||:...:.|            || .::
Zfish    61 CYHLGSPTGASATPYTTLTGTFHGIA------APYEESSPYGVNLTLAPGGVIRVPAHRPL-AAA 118

  Fly   249 TEPPTNTALGLQELGLKLEKRIEEAVPAGQQLQELGMRLRCDDMGS------ENDDMSEEDRLML 307
            ..||                 :..|||.               :||      |:.....:||...
Zfish   119 VPPP-----------------MASAVPG---------------LGSLSFPWMESSQRFAKDRFAA 151

  Fly   308 DRSPDELGSNDNDDDLGDSDSDEDLMAETTDGERIIYPWMKKIHVAGVANGSYQPGMEPKRQ--R 370
            ..:|                        .|...||.:|              ||....|||:  |
Zfish   152 ALTP------------------------FTVARRIGHP--------------YQNRTPPKRKKPR 178

  Fly   371 TAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKKDNKLPNTKNVRK 435
            |:::|.||.||||.||..:||....|..:|.||.:::.|:|.||||||.||            |:
Zfish   179 TSFSRVQICELEKRFHRQKYLASAERAALAKTLKMTDAQVKTWFQNRRTKW------------RR 231

  Fly   436 KTVDANGNPTPVAKKPTKRAASKKQQQAQQQQQSQQQQTQQTPVMNECIRSDSLESI-------G 493
            :|.:         ::..:|..:.:.....|....|:..|...|....||.:.||.::       .
Zfish   232 QTAE---------EREAERQQANRLMIQLQHDAFQKSLTDSVPTDPLCIHNSSLFALQNLQPWAS 287

  Fly   494 DVSSSLG 500
            :.||.||
Zfish   288 EESSKLG 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 26/51 (51%)
tlx3bNP_739572.1 Homeobox 177..230 CDD:278475 27/64 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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