DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dfd and Gsc2

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_083745.2 Gene:Gsc2 / 195333 MGIID:892006 Length:201 Species:Mus musculus


Alignment Length:123 Identity:33/123 - (26%)
Similarity:55/123 - (44%) Gaps:20/123 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   335 ETTDGERIIYPWMKKIHVA------------GVANGSYQPGME--PKRQRTAYTRHQILELEKEF 385
            ||:.|..:...|..::..|            ....|:..||.:  .:|.||.::..|:..||..|
Mouse    78 ETSSGPGLRLAWPLRLAPATPSPLTAPRAGSPALTGTSGPGPQRRTRRHRTIFSEEQLQALEALF 142

  Fly   386 HYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKKDNK------LPNTKNVRKKT 437
            ..|:|.....|..:|..:.|.|.::::||:|||.||:...:      ||.||...|::
Mouse   143 VQNQYPDVGTRERLAVRIRLREERVEVWFKNRRAKWRHQKRASSSRLLPGTKKTPKES 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 18/51 (35%)
Gsc2NP_083745.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..53
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 96..123 4/26 (15%)
Homeobox 126..180 CDD:333795 19/53 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 179..201 5/22 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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