DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dfd and cog-1

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001022264.1 Gene:cog-1 / 175149 WormBaseID:WBGene00000584 Length:256 Species:Caenorhabditis elegans


Alignment Length:271 Identity:66/271 - (24%)
Similarity:105/271 - (38%) Gaps:94/271 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   249 TEPPTNTALGLQEL------------GLKLEKRIEEAVPAGQQLQELGMRLRCDDMGSENDDMSE 301
            :|||..|....:::            .|.|||:  |:.|:|...:        ||..|.|||   
 Worm     6 SEPPQLTTPDDKDVENRKHSSTYSISNLLLEKK--ESSPSGSSSE--------DDSASSNDD--- 57

  Fly   302 EDRLMLDRSPDELGS-----NDNDDDLGDSDSDEDLMAETTDGERIIYPWMK--------KIHVA 353
             |:    |||....|     ..:......:.|...:||:.......:.|.::        :::..
 Worm    58 -DQ----RSPSATSSFIFPPASSSSSSESATSPTQIMAQLMANGGAVDPGLQAYFFLLQSQLNSQ 117

  Fly   354 GVANGSYQ----------------PG-----------------------MEPKRQRTAYTRHQIL 379
            .:.|...|                ||                       |:.|:.|..:|.|||.
 Worm   118 SMMNRVTQENVSRALTSFNLLNNLPGALPSLSPMGRLQHSMQLSPNSLNMQKKQSRPTFTGHQIY 182

  Fly   380 ELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKK----DNKLPNTKNVRKKTVDA 440
            :||::|...:||....|.::|..|.:||.|:|:||||||.||:|    ||.|     |::   .|
 Worm   183 QLERKFEQTKYLAGADRAQLAQELNMSESQVKVWFQNRRTKWRKKEAADNAL-----VKR---GA 239

  Fly   441 NGNPTPVAKKP 451
            :|:.:|.:..|
 Worm   240 SGDKSPCSLSP 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 24/51 (47%)
cog-1NP_001022264.1 Homeobox 172..226 CDD:365835 25/53 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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