DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dfd and tlx2

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:XP_005173139.1 Gene:tlx2 / 170781 ZFINID:ZDB-GENE-020208-1 Length:309 Species:Danio rerio


Alignment Length:319 Identity:77/319 - (24%)
Similarity:116/319 - (36%) Gaps:120/319 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 NGY---------YGGYGGGYG---------TANGSVGSTHSQG--HSP-HSQMMDLPLQCSSTEP 251
            |||         ..|..|.|.         ..|.:|.|.::.|  ..| |..|...|.|.::..|
Zfish    55 NGYNSMYPACSMAAGLAGSYNVNMNMNVSMNMNVNVNSGNAGGVIRVPAHRPMPPAPHQPTAGHP 119

  Fly   252 PTNTALGLQELGLKLEKRIEEAVPAGQQLQELGMRLRCDDMGS---------ENDDMSEEDRLML 307
            | :.|.|:..:         ..||:               |||         |:.....:|||..
Zfish   120 P-SIAAGIPTM---------PTVPS---------------MGSPHSFTFPWMESSRRFAKDRLTA 159

  Fly   308 DRSPDELGSNDNDDDLGDSDSDEDLMAETTDGERIIYPWMKKIHVAGVANGSYQPGMEPKRQ--R 370
            ..||..:                        ..||.:|              ||....|||:  |
Zfish   160 ALSPFSV------------------------TRRIGHP--------------YQNRTPPKRKKPR 186

  Fly   371 TAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKKDNKLPNTKNVRK 435
            |:::|.||.||||.||..:||....|..:|..|.:::.|:|.||||||.||::.           
Zfish   187 TSFSRVQICELEKRFHRQKYLASAERATLAKALKMTDAQVKTWFQNRRTKWRRQ----------- 240

  Fly   436 KTVDANGNPTPVAKKPTKRAASKKQQQAQQQ--QQSQQQQTQQTPVMNECIRSDSLESI 492
                     |...::..::.|::...|.||:  |::..|..||.|:   |:.:.||.::
Zfish   241 ---------TAEEREAERQQANRLMLQLQQEAFQKTLSQPLQQDPL---CLHNSSLYAL 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 25/51 (49%)
tlx2XP_005173139.1 Homeobox 185..238 CDD:278475 25/52 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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