DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dfd and Hoxd9

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_038583.1 Gene:Hoxd9 / 15438 MGIID:96210 Length:339 Species:Mus musculus


Alignment Length:414 Identity:110/414 - (26%)
Similarity:150/414 - (36%) Gaps:119/414 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 HYSMTASTGH----MSGAVGGGAGVGSVG--GGGAGGMTGHPHSMHPADMVSDYMAHHHNPHSHS 100
            :|.:.:..||    :..|..|..|.|:.|  .|.|.|         ||...:::.:....|.|..
Mouse     9 NYYVDSLIGHEGDEVFAARFGPPGPGTQGRPAGVADG---------PAAATAEFASCSFAPKSSV 64

  Fly   101 HSHTHSLPHHHSNSAISGHHQASA---GGYSSNYANATPPSHPHSHPHAHPHQSLGYYVHHAPEF 162
            .|        .|.||::....|:|   |.|           ||:..|........|.||....| 
Mouse    65 FS--------ASWSAVAAQPPAAATMSGLY-----------HPYVSPPPLAAAEPGRYVRSWME- 109

  Fly   163 ISAGAVHSDPTNGYGPAANVPNTSNGGGGGGSGAVLGGGAVGGSANGYYGGYGGGYGTANGSVGS 227
                     |..|:...|.....|.||||||.|.|   .:.||.|||.:.|.....|.|.....:
Mouse   110 ---------PLPGFPGGAGGGGGSGGGGGGGPGPV---PSPGGPANGRHYGIKPETGAAPAPAAA 162

  Fly   228 THSQGHSPHSQMMDLPLQCSST---------EPPTNTALGLQELGLKLEKRIEEAVPAGQQLQEL 283
            :.|...|..|.......:||:.         |.|.|:.|.            ::|..|......:
Mouse   163 STSSSSSTSSSSSSKRTECSAARESQGSGGPEFPCNSFLR------------DKAAAATGNGPGV 215

  Fly   284 GMRL-----------RCDDMGSENDDMSEEDRLMLDRSPDELGSNDNDDDLGDSDSDEDLMAETT 337
            |:..           .|.|..|....:.||::........:|..|:                   
Mouse   216 GIGTGPGAVGSSEPSACSDHPSPGCSLKEEEKQPPQPPQQQLDPNN------------------- 261

  Fly   338 DGERIIYPWMKKIHVAGVANGSYQPGMEPKRQRTAYTRHQILELEKEFHYNRYLTRRRRIEIAHT 402
                   |....||....           :::|..||::|.|||||||.:|.||||.||.|:|..
Mouse   262 -------PAANWIHARST-----------RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARI 308

  Fly   403 LVLSERQIKIWFQNRRMKWKKDNK 426
            |.|:|||:||||||||||.||.:|
Mouse   309 LNLTERQVKIWFQNRRMKMKKMSK 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 35/51 (69%)
Hoxd9NP_038583.1 Hox9_act 1..>153 CDD:282473 48/184 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..198 25/86 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 211..263 8/77 (10%)
HOX 272..324 CDD:197696 31/62 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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