DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dfd and Hoxd8

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_032302.2 Gene:Hoxd8 / 15437 MGIID:96209 Length:289 Species:Mus musculus


Alignment Length:366 Identity:100/366 - (27%)
Similarity:138/366 - (37%) Gaps:127/366 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 HSNSAISGHHQASAGGYSSNYANATPPSHPHSHPHAHPHQSLGYYVHHAPEFISAGAVHSDPTNG 175
            |....:||.|.|:...|.::.|     ..||:|||.|||.|                    |..|
Mouse    40 HFAPEVSGRHAAALQLYGNSAA-----GFPHAHPHPHPHPS--------------------PPPG 79

  Fly   176 YGPAANVPNTSNGGGGGGSGAVLGGGAVGGSANGYYGGYGGGYGTANGSVGSTHSQGHSPHSQMM 240
            .|          ||||.|.|            ..|:.. |.|..||     :..:....||....
Mouse    80 CG----------GGGGPGPG------------QDYFHA-GAGSPTA-----AYQAAPPPPHPPPP 116

  Fly   241 DLPLQCSST----EPPTNTALGLQELGLKLEKRIEEAVPAGQQLQELGMRLRCDDMGSENDDMSE 301
            ..|..|...    ||.  ...|...|.       .:.:...||..||   ::..|..|.:.::.|
Mouse   117 PPPPPCGGIACHGEPA--KFYGYDNLQ-------RQPIFTTQQEAEL---VQYPDCKSSSGNIGE 169

  Fly   302 EDRLMLDRSPDELGSNDNDDDLGDSDSDEDLMAETTDGERIIYPWMKKIHVAGVANGSYQPGMEP 366
            :        ||.|..:.:...:                    :|||:             |...|
Mouse   170 D--------PDHLNQSSSPSQM--------------------FPWMR-------------PQAAP 193

  Fly   367 --KRQRTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKKDNKLPN 429
              :|.|..|:|.|.|||||||.:|.||||:||||::|||.|:|||:|||||||||||||:|    
Mouse   194 GRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHTLALTERQVKIWFQNRRMKWKKEN---- 254

  Fly   430 TKNVRKKTVDANGNPTPVAKKPTKRAASKKQQQAQQQQQSQ 470
                       |.:..|.::...|....||:....::..::
Mouse   255 -----------NKDKFPASRPEAKDGDPKKEVSGLEEDGAE 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 37/51 (73%)
Hoxd8NP_032302.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 62..125 27/110 (25%)
COG5576 139..272 CDD:227863 61/198 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 162..184 5/49 (10%)
Antp-type hexapeptide 183..188 2/24 (8%)
Homeobox 199..251 CDD:278475 37/51 (73%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 252..289 7/48 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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