DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dfd and Hoxa3

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_034582.1 Gene:Hoxa3 / 15400 MGIID:96175 Length:443 Species:Mus musculus


Alignment Length:404 Identity:107/404 - (26%)
Similarity:155/404 - (38%) Gaps:99/404 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 ANGYYGGYGGGYGTANGSVGSTHSQGHSP--------------------------HSQMMDLPLQ 245
            ::..||||  .|..|||...:...|.::|                          |.:..:|...
Mouse     9 SSAIYGGY--PYQAANGFAYNASQQPYAPSAALGTDGVEYHRPACSLQSPASAGGHPKTHELSEA 71

  Fly   246 CSST------EPPTNTALGLQELGLKLEKRIEEAVPAGQQLQELGMRLRCDDMGSENDDMSEEDR 304
            |..|      :||     ||.|..|. ....:.|.||.|..|.                 ..:..
Mouse    72 CLRTLSGPPSQPP-----GLGEPPLP-PPPPQAAPPAPQPPQP-----------------PPQPP 113

  Fly   305 LMLDRSPDELGS-----NDNDDDLGDSDSDEDLMAETTDGERIIYPWMK------KIHVAGVANG 358
            .....:|....|     :.|.:....|.:...|:...|.|:: |:||||      |...:|.::|
Mouse   114 APTPAAPPPPSSVSPPQSANSNPTPASTAKSPLLNSPTVGKQ-IFPWMKESRQNTKQKTSGSSSG 177

  Fly   359 ------SYQPGM-EPKRQRTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQN 416
                  ...||. ..||.|||||..|::|||||||:||||.|.||:|:|:.|.|:||||||||||
Mouse   178 ESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 242

  Fly   417 RRMKWKKDNKLPNTKNVRKKTVDANGNPTPVAKKPTKRAASKKQQQAQQQQQSQQQQTQQTPVMN 481
            ||||:|||.|       .|..:.::|..:| ::.|....|............|...:.|..|..:
Mouse   243 RRMKYKKDQK-------GKGMLTSSGGQSP-SRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFS 299

  Fly   482 ECIRSDSLESIGDVSSSLGNPPYIPAAPETTSSYPGSQQHLSNNNNNGSGNNNNNNNNNNSNLNN 546
            :           ....:.|.||....||..:.:.|...|.......:|:|    ...:.:.:.:.
Mouse   300 K-----------PPQGAYGLPPASYPAPLPSCAPPPPPQKRYTAAGSGAG----GTPDYDPHAHG 349

  Fly   547 NNNNNQMGHTNLHG 560
            ...|...|..:|.|
Mouse   350 LQGNGSYGTPHLQG 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 38/51 (75%)
Hoxa3NP_034582.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 74..151 17/99 (17%)
Antp-type hexapeptide 156..161 3/4 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..197 7/33 (21%)
COG5576 <182..309 CDD:227863 55/145 (38%)
Homeobox 196..249 CDD:365835 38/52 (73%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..354 21/128 (16%)
DUF4074 378..441 CDD:372548
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..443
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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