DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dfd and Hoxa3

DIOPT Version :10

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_034582.1 Gene:Hoxa3 / 15400 MGIID:96175 Length:443 Species:Mus musculus


Alignment Length:404 Identity:107/404 - (26%)
Similarity:155/404 - (38%) Gaps:99/404 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 ANGYYGGYGGGYGTANGSVGSTHSQGHSP--------------------------HSQMMDLPLQ 245
            ::..||||  .|..|||...:...|.::|                          |.:..:|...
Mouse     9 SSAIYGGY--PYQAANGFAYNASQQPYAPSAALGTDGVEYHRPACSLQSPASAGGHPKTHELSEA 71

  Fly   246 CSST------EPPTNTALGLQELGLKLEKRIEEAVPAGQQLQELGMRLRCDDMGSENDDMSEEDR 304
            |..|      :||     ||.|..|. ....:.|.||.|..|.                 ..:..
Mouse    72 CLRTLSGPPSQPP-----GLGEPPLP-PPPPQAAPPAPQPPQP-----------------PPQPP 113

  Fly   305 LMLDRSPDELGS-----NDNDDDLGDSDSDEDLMAETTDGERIIYPWMK------KIHVAGVANG 358
            .....:|....|     :.|.:....|.:...|:...|.|:: |:||||      |...:|.::|
Mouse   114 APTPAAPPPPSSVSPPQSANSNPTPASTAKSPLLNSPTVGKQ-IFPWMKESRQNTKQKTSGSSSG 177

  Fly   359 ------SYQPGM-EPKRQRTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQN 416
                  ...||. ..||.|||||..|::|||||||:||||.|.||:|:|:.|.|:||||||||||
Mouse   178 ESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 242

  Fly   417 RRMKWKKDNKLPNTKNVRKKTVDANGNPTPVAKKPTKRAASKKQQQAQQQQQSQQQQTQQTPVMN 481
            ||||:|||.|       .|..:.::|..:| ::.|....|............|...:.|..|..:
Mouse   243 RRMKYKKDQK-------GKGMLTSSGGQSP-SRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFS 299

  Fly   482 ECIRSDSLESIGDVSSSLGNPPYIPAAPETTSSYPGSQQHLSNNNNNGSGNNNNNNNNNNSNLNN 546
            :           ....:.|.||....||..:.:.|...|.......:|:|    ...:.:.:.:.
Mouse   300 K-----------PPQGAYGLPPASYPAPLPSCAPPPPPQKRYTAAGSGAG----GTPDYDPHAHG 349

  Fly   547 NNNNNQMGHTNLHG 560
            ...|...|..:|.|
Mouse   350 LQGNGSYGTPHLQG 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeodomain 367..423 CDD:459649 40/55 (73%)
Hoxa3NP_034582.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 74..151 17/99 (17%)
Antp-type hexapeptide 156..161 3/4 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..197 7/33 (21%)
COG5576 <182..309 CDD:227863 55/145 (38%)
Homeodomain 193..249 CDD:459649 40/55 (73%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..354 21/128 (16%)
DUF4074 378..441 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..443
Blue background indicates that the domain is not in the aligned region.

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