DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dfd and gbx1

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_777286.1 Gene:gbx1 / 142985 ZFINID:ZDB-GENE-020117-2 Length:316 Species:Danio rerio


Alignment Length:341 Identity:93/341 - (27%)
Similarity:134/341 - (39%) Gaps:74/341 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 PHAHPHQSL--GY--YVHHAPEFISAGAVHSDPTNGYGPAANVPNTSNGGGGGGSGAVLGGGAVG 204
            |...|...|  ||  ::.:.|..|.....||...:|..|.|.:.:.:                 |
Zfish    20 PQPRPGHLLYTGYPMFMPYRPLMIPQALSHSSLPSGIPPLAPLASFA-----------------G 67

  Fly   205 GSANGYYGGYGGGYGTANGSVGSTHSQGHSPHSQMMDLPLQCSSTEPPTN---------TALGLQ 260
            ...|.:..|.|.|..:   .|..|.:           ||   |.::||.:         ..||..
Zfish    68 RLTNTFCAGLGQGMPS---MVALTTT-----------LP---SFSDPPDSFYPPQEMPGPRLGAD 115

  Fly   261 ELGLKLEKRIEEAVPAGQQLQELGMRLRCDDMGSENDDMSEEDRLMLDRSPDELGSNDNDDDLGD 325
            ..|:..::...:.: .|.:|  |........:..|....|.:|. .||....|...:|.:|...|
Zfish   116 GTGMNRQESPHDEL-KGSEL--LNFTETFQAVAGETKLYSSDDE-KLDLKAAEAACSDREDSSAD 176

  Fly   326 SDSDEDLMAETTDGERIIYPWMKKIHVAGVANGSYQPGMEP-------KRQRTAYTRHQILELEK 383
            |:::     ..:||........|     |...|..|..:.|       :|:|||:|..|:|||||
Zfish   177 SENE-----SFSDGNTCASASQK-----GKLKGGSQDALPPGGSAGKSRRRRTAFTSEQLLELEK 231

  Fly   384 EFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKKDNKLPNTKNVRKKTVDANGNPTPVA 448
            |||..:||:...|.:|||.|.|||.|:||||||||.|||:    ....||..::.:...||..|.
Zfish   232 EFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR----IKAGNVNNRSGEPVRNPKIVV 292

  Fly   449 KKP--TKRAASKKQQQ 462
            ..|  ..|.|.:.|.|
Zfish   293 PIPVHVNRFAVRSQHQ 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 33/51 (65%)
gbx1NP_777286.1 Homeobox 217..270 CDD:278475 33/52 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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