DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dfd and Cdx2

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_031699.2 Gene:Cdx2 / 12591 MGIID:88361 Length:311 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475
Cdx2NP_031699.2 Caudal_act 13..170 CDD:282574
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 111..151
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:Q99626 185..215
Homeobox 189..241 CDD:278475
Interaction with 5-mCpG DNA. /evidence=ECO:0000250|UniProtKB:Q99626 227..241
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 239..311
4S motif, modulates transactivation activity and protein stability. /evidence=ECO:0000269|PubMed:16027724 281..293
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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