DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dfd and hoxd13

DIOPT Version :10

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:XP_002935723.1 Gene:hoxd13 / 100498102 XenbaseID:XB-GENE-482320 Length:300 Species:Xenopus tropicalis


Alignment Length:406 Identity:90/406 - (22%)
Similarity:132/406 - (32%) Gaps:147/406 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 MSGAVGGGAGVGSVGGGGAGGMTGHPHSMHPADMVSDYMAHHHNPHSHSHSHTHSLPH-HHSNSA 115
            |.|..|||.|               |.|....:.:|       :|.......:.::|. .:|...
 Frog    13 MEGLRGGGEG---------------PSSNQCRNFLS-------SPSVFGSPSSRTVPGLAYSAPD 55

  Fly   116 ISGHHQASAGGYSSNYANATPPSHPHSHPHAHPHQSLGYYVHHAPEFISAGAVHSDPTNGYGPAA 180
            .||..:|.|.........:|.||.|          ||||..|....:.|....|     |.|...
 Frog    56 RSGSARAEATKEGPTCPASTGPSGP----------SLGYGYHFGNGYYSCRMSH-----GVGLQQ 105

  Fly   181 NVPNTSNGGGGGGSGAVLGGGA------VGGSAN---------------GYYGGYGGGYGTANGS 224
            |...:|       |.|.|||..      |.|.|:               .|:.||...|      
 Frog   106 NPLKSS-------SHASLGGFPVEKYMDVSGLASTSVPSNEVSSRAKEVSYFQGYTNPY------ 157

  Fly   225 VGSTHSQGHSPHSQMMDLPLQCSSTEPPTNTALGLQELGLKLEKRIEEAVPAGQQLQELGM---- 285
               .|..|:      :|:....||.||.....:.::                |.|...|..    
 Frog   158 ---QHVPGY------LDMVSTFSSGEPRHEAYISME----------------GYQSWTLANGWNG 197

  Fly   286 RLRCDDMGSENDDMSEEDRLMLDRSPDELGSNDNDDDLGDSDSDEDLMAETTDGERIIYPWMKKI 350
            ::.|.      .|.|:.........|.::..|..|..:                           
 Frog   198 QVYCP------KDQSQAPHFWKSSFPGDVALNQADMCV--------------------------- 229

  Fly   351 HVAGVANGSYQPGMEPKRQRTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQ 415
                     |:.|   :::|..||:.|:.|||.|:..|:::.:.:|..|:....|||||:.||||
 Frog   230 ---------YRRG---RKKRVPYTKLQLKELENEYAVNKFINKDKRRRISAATNLSERQVTIWFQ 282

  Fly   416 NRRMKWKK-DNKLPNT 430
            |||:|.|| .:||.:|
 Frog   283 NRRVKDKKIVSKLKDT 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeodomain 367..423 CDD:459649 24/55 (44%)
hoxd13XP_002935723.1 HoxA13_N 10..143 CDD:463521 39/173 (23%)
Homeodomain 234..290 CDD:459649 24/55 (44%)

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