DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dfd and hoxb1

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:XP_004918719.1 Gene:hoxb1 / 100493290 XenbaseID:XB-GENE-485772 Length:304 Species:Xenopus tropicalis


Alignment Length:469 Identity:110/469 - (23%)
Similarity:159/469 - (33%) Gaps:187/469 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSSFL---------MGY-PHAPHHVQSPMSMGNGLDPKFP--PLADDYHHYNGHYSMTASTGHMS 53
            |||||         ..| |...||.:..       .|.||  |..:|.::.:|.:          
 Frog     6 MSSFLDYAICNRGTSAYSPRGYHHFEQG-------TPPFPACPGTNDIYNGDGRF---------- 53

  Fly    54 GAVGGGAGVGSVGGGGAGGMTGHPHSMHPADMVSDYMAHHHNPHSHSHSHTHSLPHHHSNSAISG 118
             .||||.||                                  .||.|....|.|          
 Frog    54 -VVGGGNGV----------------------------------PSHLHQQNPSYP---------- 73

  Fly   119 HHQASAG-GYSSNYANATPPSHPHSHPHAHPHQSLGYYVHHAPEFISAGAVHSDPTNGYGPAANV 182
             .|.||| .|:::..:.||.:         .:|:.|:..:.:|:   |..::...|      |..
 Frog    74 -PQPSAGVPYTNSLTSYTPQT---------CNQAYGHQAYASPD---ADGIYFQQT------AYC 119

  Fly   183 PNTSNGGGGGGSGAVLGGGAVGGSANGYYGGYGGGYGTANGSVGSTHSQGHSPHSQMMDLPLQCS 247
            .||                  |.::|.|..||.|..      .|....|.| |:.|.....|| :
 Frog   120 SNT------------------GANSNSYSDGYCGAV------PGPAQYQQH-PYGQEHQGLLQ-A 158

  Fly   248 STEPPTNTALGLQELGLKLEKRIEEAVPAGQQLQELGMRLRCDDMGSENDDMSEEDRLMLDRSPD 312
            ...||:           .|.:..|.:.|:.|.|..                 ...|.:.:.|:|.
 Frog   159 YHNPPS-----------MLHEEKEPSCPSEQALPN-----------------HTFDWMKVKRNPP 195

  Fly   313 ELGSNDNDDDLGDSDSDEDLMAETTDGERIIYPWMKKIHVAGVANGSYQPGMEPKRQRTAYTRHQ 377
            :..:...|..|            :|....|                           ||.:|..|
 Frog   196 KTTAKPVDFGL------------STQQNTI---------------------------RTNFTTKQ 221

  Fly   378 ILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKKDNKLPNTKNVRKKTVDANG 442
            :.|||||||:|:||||.||:|||.||.|:|.|:||||||||||.||..:.....:..|.::..||
 Frog   222 LTELEKEFHFNKYLTRARRVEIAATLELNETQVKIWFQNRRMKQKKREREGLAPSAIKGSMKENG 286

  Fly   443 NPTPVAKKPTKRAA 456
            ..:.::...:..|:
 Frog   287 EMSDLSSSTSPDAS 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 36/51 (71%)
hoxb1XP_004918719.1 PTZ00395 <12..>147 CDD:185594 45/240 (19%)
Homeobox 214..267 CDD:365835 36/52 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 121 1.000 Inparanoid score I4611
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.050

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