DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dfd and hlx

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:XP_004914850.1 Gene:hlx / 100488508 XenbaseID:XB-GENE-483226 Length:397 Species:Xenopus tropicalis


Alignment Length:457 Identity:99/457 - (21%)
Similarity:158/457 - (34%) Gaps:143/457 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 YANATPPSHPHSHPHAHPHQSLGYYVHHAPEFISAGAVHSDPTNGYGPAANVPNTSNGGGGGGSG 195
            ||....|.:..||            .:..|.:.::||       |.| ||..|....|.......
 Frog     2 YATGLAPFYASSH------------FNLWPAYCTSGA-------GSG-AAGFPALDTGKKPSFCI 46

  Fly   196 A-VLGGG----AVGGSANGYYGGYGGGYGTANGSVGSTHSQGHSP----------------HSQM 239
            | :|.||    ..|.||            ....|||..|...:.|                |.::
 Frog    47 ADILHGGDPESPPGSSA------------LTAASVGVIHPAQYQPAGSPFRPTPVTPESSFHHRL 99

  Fly   240 MDLP--------LQCS----------STEP-PTNTAL--GLQE-LGLKLEKRIEEA--------- 273
            ..||        ..|:          ||:| |.:..|  |:.. |..:.:.:::|.         
 Frog   100 SPLPPYQPHRAVSLCTNNSSRARMHKSTQPAPCSKDLKFGIDRILSAEFDPKVKEGNTLRDLTSL 164

  Fly   274 VPAGQQ--LQELGMRLRCDDMGSENDDMSEEDRLMLDRSPDELGSNDNDDDLGDSDSDEDLMAET 336
            :.||||  |....|:.......:..:.:.|...|        ||..:     |...|......:|
 Frog   165 ISAGQQSGLPGQHMQSTAGHFFAPLEPLGEASSL--------LGQLN-----GSQRSSVQQFQDT 216

  Fly   337 --TDGERIIYPWMKKIHVAGVANGSY-------QPGMEPKRQ---RTAYTRHQILELEKEFHYNR 389
              .||.|.:|.|           |.|       .|....:::   |..::..|...|||.|...:
 Frog   217 FPGDGSRKLYMW-----------GPYAVLTKDTMPQTYKRKRSWSRAVFSNLQRKGLEKRFEVQK 270

  Fly   390 YLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKKDNKLPNTKNVRKKTVDANGNPTPVAKKPTKR 454
            |:|:..|.::|..|.|::.|:|:|||||||||:...:....|:..|:.          |:||...
 Frog   271 YVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSKEAQAQKDKEKEE----------AEKPEAP 325

  Fly   455 AASKKQQQAQQQQQSQQQQTQQTPVMNECIRSDSLESIGDVSSSLGNPPYIPAAPETTSSYPGSQ 519
            .:.    :.|..:.|...:::.....::|...|.:.|..:.:.:       |:.|:.||....|.
 Frog   326 GSG----EVQMDRSSSPYRSEGESESSDCESLDMMPSDSERTET-------PSEPQATSVIKSSP 379

  Fly   520 QH 521
            ||
 Frog   380 QH 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 22/51 (43%)
hlxXP_004914850.1 Homeobox 250..304 CDD:365835 23/53 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.