DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dfd and hoxa3

DIOPT Version :9

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001120901.1 Gene:hoxa3 / 100151729 XenbaseID:XB-GENE-482267 Length:406 Species:Xenopus tropicalis


Alignment Length:422 Identity:110/422 - (26%)
Similarity:168/422 - (39%) Gaps:95/422 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 ANGYYGGYGGGYGTANGSVGSTHSQGHSPHSQMMDLPLQCSSTEPPTNTALGLQELGLKLEKRIE 271
            ::..||||  .|..|||...:...|.:.|.|.:::....        ..|..||..|        
 Frog     9 SSAIYGGY--PYQGANGFTYNASQQQYPPSSSLLETEYH--------RPACSLQSPG-------- 55

  Fly   272 EAVP--AGQQLQELGMRLRCDDMGSENDD--MSEEDRLMLDRSPDELGSNDNDDDLGDSDSDEDL 332
            .|||  ....:.|..||    .:.|:::.  :..|.:......|..:.......:...:.|::..
 Frog    56 SAVPHHKANDINESCMR----TINSQSNQAPVIPEQQPTPQGPPPSVSPPQTTSNAATASSNKAT 116

  Fly   333 MAETTDGERIIYPWMK------KIHVAG-------VANGSYQPGM-EPKRQRTAYTRHQILELEK 383
            ...:....:.|:||||      |...||       .|.....||. ..||.|||||..|::||||
 Frog   117 SITSPTMSKQIFPWMKESRQNTKQQKAGSSSSGESCAGDKSPPGQSSSKRARTAYTSAQLVELEK 181

  Fly   384 EFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMKWKKDNKLPNTKNVRKKTVDANGNPTPVA 448
            |||:||||.|.||:|:|:.|.|:||||||||||||||:|||.|       .|..:.::|..:|..
 Frog   182 EFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK-------GKSMMTSSGGQSPCR 239

  Fly   449 KKPTKRAASKKQQQAQQQQQSQQQQTQQTPVMNE------------------CIRSDSLES---- 491
            ......:.............|...:.|..|..|:                  |.......|    
 Frog   240 SPVPTPSVGGYLNSMHSLVNSVPYEPQSPPAFNKHHPSAYGVPAPYPSPHNSCPPHQKRYSGTAA 304

  Fly   492 ---------IGDVSSSLGNPPYIPAAP--------ET-TSSYPG--SQQHLSNNNNN----GSGN 532
                     :...|.:.|| |::..:|        || |:|.|.  ...|||::::|    |:|.
 Frog   305 VTPEYEPHPLQQSSGAYGN-PHVQGSPVYVGGNYVETMTNSGPSMFGLSHLSHSSSNMDYSGAGP 368

  Fly   533 NNNNNNNNNSNLNNNNNNNQMGHTNLHGHLQQ 564
            .|:.:::...: ::....:...|.|..|.:|:
 Frog   369 MNSGHHHGPCD-SHPTYTDLSAHHNPQGRIQE 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeobox 370..422 CDD:278475 38/51 (75%)
hoxa3NP_001120901.1 Homeobox 168..221 CDD:395001 38/52 (73%)
DUF4074 344..404 CDD:404218 13/57 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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