DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ama and sdk1a

DIOPT Version :9

Sequence 1:NP_731114.2 Gene:Ama / 40831 FlyBaseID:FBgn0000071 Length:341 Species:Drosophila melanogaster
Sequence 2:XP_009297968.1 Gene:sdk1a / 558391 ZFINID:ZDB-GENE-081104-374 Length:2245 Species:Danio rerio


Alignment Length:366 Identity:88/366 - (24%)
Similarity:136/366 - (37%) Gaps:98/366 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 IGLIFCLAISLD------------SVLSAPVI-SQISKDVVASVGDSVEFNCTVEEVGQLSVSWA 67
            :|:..|.|:.||            |:..||.. ::..:.::..|..||:..|....|....:.|.
Zfish   387 VGMYVCEALLLDSSVKPAEARAFLSITEAPYFTAEPRRKMMGEVEKSVDIQCQARGVPMPKLEWY 451

  Fly    68 KRPSESDTNSVVLSMRNILSLPDQRYNVTVTEGPKTGSAIYTFRIQNIEVSDMGPYECQVLVSAT 132
            |       ::|.||..|     :.||.:..:.|         .:::.::.||.|.::|....||.
Zfish   452 K-------DAVPLSKLN-----NPRYKIISSMG---------LQVRKLQPSDAGIFQCFARNSAG 495

  Fly   133 E-KVTKKLSLQIKTPPVIAENTPKSTLVTEGQNLELTCHANGFPKPTISWAREHNAVMPAGG--- 193
            | :|...|.:....|...|  .|....||:|.....||..:|.|||.|.|.|: ..::.:|.   
Zfish   496 EAQVHTYLDVTSMAPAFTA--PPLDITVTDGAVAAFTCRVSGAPKPAIVWRRD-TQILASGSVQI 557

  Fly   194 ---HLLAEPTLRIRSVHRMDRGGYYCIAQNGEG-------------------QPDKRLIRVEVEF 236
               .||....|:|:.|...|.|.|.|.|.|.||                   ..|:|:|:     
Zfish   558 PRFTLLESGGLQIQPVVLQDTGNYTCYAANSEGAINASASLTVWSRTSISSPPTDRRVIK----- 617

  Fly   237 RPQIAVQRPKIAQMVSHSAELECSVQGYPAPTV--VWHKNGVPLQSSRHHEVANTASSSGTTTSV 299
                           ..:|.|||.....|...|  ||.|:...:..||...::....|       
Zfish   618 ---------------GTTAILECGATHDPRVGVRYVWKKDEELVSHSRGGRISLQEGS------- 660

  Fly   300 LRIDSVGEEDFGDYYCNATNKLGH--ADARLHLFQTVIPVP 338
            |.|......|.|:|.|:..::.|:  .:|||.    ||.:|
Zfish   661 LHISQTWSGDIGNYTCDVISEAGNESKEARLE----VIELP 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AmaNP_731114.2 I-set 33..143 CDD:254352 24/111 (22%)
Ig 37..127 CDD:299845 18/89 (20%)
IG_like 154..234 CDD:214653 30/104 (29%)
IGc2 161..223 CDD:197706 22/67 (33%)
I-set 254..330 CDD:254352 22/79 (28%)
IGc2 254..322 CDD:197706 18/69 (26%)
sdk1aXP_009297968.1 I-set 125..208 CDD:254352
Ig 125..204 CDD:299845
IG_like 222..302 CDD:214653
Ig 236..287 CDD:299845
Ig_3 322..394 CDD:290638 2/6 (33%)
I-set 323..412 CDD:254352 5/24 (21%)
I-set 416..505 CDD:254352 24/109 (22%)
Ig 436..500 CDD:299845 18/84 (21%)
I-set 510..600 CDD:254352 29/92 (32%)
Ig 527..600 CDD:299845 23/73 (32%)
I-set 605..693 CDD:254352 25/118 (21%)
Ig 610..693 CDD:299845 25/113 (22%)
FN3 697..788 CDD:238020 1/1 (100%)
fn3 800..886 CDD:278470
FN3 901..997 CDD:238020
FN3 1002..1090 CDD:238020
FN3 1100..1196 CDD:238020
FN3 1206..1301 CDD:238020
FN3 1308..1397 CDD:238020
FN3 1408..1501 CDD:238020
FN3 1507..1602 CDD:238020
FN3 1616..1722 CDD:238020
FN3 1732..1825 CDD:238020
FN3 1830..1919 CDD:238020
FN3 1931..2021 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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