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Protein Alignment Ama and Lrit1
DIOPT Version :9
Sequence 1: | NP_731114.2 |
Gene: | Ama / 40831 |
FlyBaseID: | FBgn0000071 |
Length: | 341 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_647547.2 |
Gene: | Lrit1 / 246214 |
RGDID: | 628607 |
Length: | 623 |
Species: | Rattus norvegicus |
Alignment Length: | 109 |
Identity: | 35/109 - (32%) |
Similarity: | 54/109 - (49%) |
Gaps: | 15/109 - (13%) |
- Green bases have known domain annotations that are detailed below.
Fly 233 EVEFR----PQIAVQRPKIAQMVS---HSAELECSVQGYPAPTVVWHK-NGVPLQSSRHHEVANT 289
::|.| |:: ||.:..::| .:..|.|...|.|.|.:.|.: ||.||..:.|.||
Rat 245 QLELRKCQSPEL---RPGVTSIISPLGSTVLLRCGATGIPGPEMSWRRANGRPLNGTVHQEV--- 303
Fly 290 ASSSGTTTSVLRIDSVGEEDFGDYYCNATNKLGHADARLHLFQT 333
||.|::.::|.:..|...|.|||.|.|.|.||.::..:.|..|
Rat 304 -SSDGSSWTLLDLPVVSLFDSGDYICQAKNFLGASETLISLIVT 346
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
Ama | NP_731114.2 |
I-set |
33..143 |
CDD:254352 |
|
Ig |
37..127 |
CDD:299845 |
|
Software error:
Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.
For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message
and the time and date of the error.