DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ama and Lrit1

DIOPT Version :9

Sequence 1:NP_731114.2 Gene:Ama / 40831 FlyBaseID:FBgn0000071 Length:341 Species:Drosophila melanogaster
Sequence 2:NP_666357.2 Gene:Lrit1 / 239037 MGIID:2385320 Length:624 Species:Mus musculus


Alignment Length:328 Identity:71/328 - (21%)
Similarity:114/328 - (34%) Gaps:107/328 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 TVEEVGQLSVSWAKRPSESDTNSVVL-SMRNI--LSLPDQRYNVTVTEGPKTGSAIYTFRIQNIE 116
            |...:.:|...|....:.|:.::::| .:|.:  |.||              |:.:.||      
Mouse    78 TFRPLSRLEQLWLPYNALSELSALMLRGLRRLRELRLP--------------GNRLVTF------ 122

  Fly   117 VSDMGPYECQVLVSATEKVTKKLSL------QIKT-PPVIAENTPKSTLVTEGQNLELTCHANGF 174
                 |:       |..:.|.:|.|      ::.| ||..|......|.:....|..:.     .
Mouse   123 -----PW-------AALRDTPQLQLLDLQANRLSTLPPEAAHFLENLTFLDLSNNQLMR-----L 170

  Fly   175 PKPTIS-WAREHNAVMPAGGHLLAEPTLRIRS------------VHRMDRGGYYCIAQNGEGQPD 226
            |:..:. ||........:|.|  |...|.::.            ||.:|            |...
Mouse   171 PEELLDVWAHLKTGPFLSGHH--ARLILGLQDNPWVCDCRLYDLVHLLD------------GWVS 221

  Fly   227 KRLIRVEVEFR----------------------PQIAVQRPKIAQMVS---HSAELECSVQGYPA 266
            ..||.:|...|                      |::   ||.:..::|   .:..|.|...|.|.
Mouse   222 SNLIFIEARLRCASPRSLAG
VAFSQLELRKCQSPEL---RPGVTSIISPLGSTVLLRCGATGIPG 283

  Fly   267 PTVVWHK-NGVPLQSSRHHEVANTASSSGTTTSVLRIDSVGEEDFGDYYCNATNKLGHADARLHL 330
            |.:.|.: ||.||..:.|.||    ||.|::.::|.:..|...|.|||.|.|.|.||.::..:.|
Mouse   284 PEMSWRRANGRPLNGTVHQEV----SSDGSSWTLLDLPVVSLFDSGDYICQAKNFLGASETLISL 344

  Fly   331 FQT 333
            ..|
Mouse   345 IVT 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AmaNP_731114.2 I-set 33..143 CDD:254352 17/96 (18%)
Ig 37..127 CDD:299845 13/74 (18%)
IG_like 154..234 CDD:214653 15/92 (16%)
IGc2 161..223 CDD:197706 11/74 (15%)
I-set 254..330 CDD:254352 27/76 (36%)
IGc2 254..322 CDD:197706 25/68 (37%)
Lrit1NP_666357.2 LRRNT 23..61 CDD:214470
LRR 1 60..81 1/2 (50%)
LRR_8 63..143 CDD:290566 17/96 (18%)
leucine-rich repeat 64..84 CDD:275378 1/5 (20%)
LRR 2 84..105 4/20 (20%)
leucine-rich repeat 85..132 CDD:275378 14/78 (18%)
LRR 3 108..129 8/52 (15%)
LRR_8 131..>176 CDD:290566 9/49 (18%)
LRR_4 131..172 CDD:289563 8/45 (18%)
LRR 4 132..153 6/20 (30%)
leucine-rich repeat 133..156 CDD:275378 6/22 (27%)
LRR 5 156..177 3/25 (12%)
leucine-rich repeat 157..180 CDD:275378 4/27 (15%)
leucine-rich repeat 181..205 CDD:275378 4/25 (16%)
TPKR_C2 201..>241 CDD:301599 8/51 (16%)
Ig 258..346 CDD:299845 31/91 (34%)
IG_like 268..346 CDD:214653 28/81 (35%)
FN3 432..502 CDD:214495
LRR 6 526..549
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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