DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ama and nfasca

DIOPT Version :10

Sequence 1:NP_731114.2 Gene:Ama / 40831 FlyBaseID:FBgn0000071 Length:341 Species:Drosophila melanogaster
Sequence 2:XP_068080177.2 Gene:nfasca / 100141490 ZFINID:ZDB-GENE-080229-6 Length:1391 Species:Danio rerio


Alignment Length:289 Identity:67/289 - (23%)
Similarity:117/289 - (40%) Gaps:38/289 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 GDSVEFNCTVEEVGQLSVSWAKRPSESDTNSVVLSMRNILSLPDQRYNVTVTEGPKTGSAIYTFR 111
            |:.:...|....|...:::|:||..:..|..|                       :.|:...|.|
Zfish   276 GEELLLECIAAGVPTPTITWSKRGGDLPTKKV-----------------------RIGNFEKTLR 317

  Fly   112 IQNIEVSDMGPYECQVLVSATEKVTKKLSLQIKTPPVIAENTPKSTLVTEGQNLELTCHANGFPK 176
            |.|:...|:|.|.| :..:....:...:.:|:|..|...|. |.:.::...::..|.|.|||.||
Zfish   318 ILNVSEEDIGSYTC-MASNRIGSIRHTVEVQVKAAPFWLEK-PINLVLAPDESGRLVCRANGSPK 380

  Fly   177 PTISWAREHNAV---MPAGGHLLAEPTLRIRSVHRMDRGGYYCIAQNGEGQPDKRLIRVEVEFRP 238
            |||.|......:   :|.....:.:.|:...:|.......|.|.|.|..|..........::..|
Zfish   381 PTIQWLVNGEPIESSLPNPNRRVLDDTIIFETVQFESSAVYQCNASNEHGYLLANAFVSVLDMAP 445

  Fly   239 QIAVQRPKIAQMVSHSAE-LECSVQGYPAPTVVWHKNGVPL-QSSRHHEVANTASSSGTTTSVLR 301
            ::...:.::.:::.::.. |||...|.|.|.:.|.|||:.. ....|:.:.:    :||    |.
Zfish   446 RMLGPKNQLIKVIENNRTFLECPFFGSPLPLLRWFKNGLGSGLDGGHYRLYH----NGT----LE 502

  Fly   302 IDSVGEEDFGDYYCNATNKLGHADARLHL 330
            |.....||.|.|.|.|:|.||..:.::.|
Zfish   503 IKQARTEDQGTYTCVASNILGKMENQVRL 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AmaNP_731114.2 I-set 33..143 CDD:400151 17/95 (18%)
Ig strand B 50..54 CDD:409353 0/3 (0%)
Ig strand C 63..68 CDD:409353 1/4 (25%)
Ig strand E 101..112 CDD:409353 2/10 (20%)
Ig strand F 122..127 CDD:409353 2/4 (50%)
Ig strand G 136..139 CDD:409353 0/2 (0%)
Ig_3 146..220 CDD:464046 20/76 (26%)
I-set 254..330 CDD:400151 24/77 (31%)
Ig strand B 255..259 CDD:409353 1/4 (25%)
Ig strand C 268..272 CDD:409353 0/3 (0%)
Ig strand E 298..302 CDD:409353 1/3 (33%)
Ig strand F 312..317 CDD:409353 2/4 (50%)
nfascaXP_068080177.2 None

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