DRSC/TRiP Functional Genomics Resources

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Protein Alignment bcd and HDG8

DIOPT Version :10

Sequence 1:NP_788587.1 Gene:bcd / 40830 FlyBaseID:FBgn0000166 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_186976.2 Gene:HDG8 / 821305 AraportID:AT3G03260 Length:699 Species:Arabidopsis thaliana


Alignment Length:187 Identity:46/187 - (24%)
Similarity:63/187 - (33%) Gaps:55/187 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQ 162
            :||....|..||..||.:|.:..:....:...|..:|.|...|:|.||:|:|.:.|.|.|:..:.
plant    24 KRTCHRHTPQQIQRLEAYFKECPHPDERQRNQLCRELKLEPDQIKFWFQNKRTQSKTQEDRSTNV 88

  Fly   163 SYEGMPLSPGMKQSD----------------GDPP--------SLQTLSLGGGATPNA------- 196
            ...|   .....|||                |.||        :||.|..     .||       
plant    89 LLRG---ENETLQSDNEAMLDALKSVLCPACGGPPFGREERGHNLQKLRF-----ENARLKDHRD 145

  Fly   197 ----LTPSPTPSTPTAHMTEHYSESFNAY-YNYNGGHNHAQANRHMHMQYPSGG-GP 247
                ......|:.||...:..|..|.:.. |..|||          :|..||.. ||
plant   146 RISNFVDQHKPNEPTVEDSLAYVPSLDRISYGINGG----------NMYEPSSSYGP 192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bcdNP_788587.1 Homeodomain 106..153 CDD:459649 14/46 (30%)
HDG8NP_186976.2 Homeodomain 24..79 CDD:459649 17/54 (31%)
START_ArGLABRA2_like 208..434 CDD:176884
SRPBCC 486..664 CDD:472699
Blue background indicates that the domain is not in the aligned region.

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