DRSC/TRiP Functional Genomics Resources

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Protein Alignment bcd and Hoxa7

DIOPT Version :9

Sequence 1:NP_788587.1 Gene:bcd / 40830 FlyBaseID:FBgn0000166 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001102703.2 Gene:Hoxa7 / 500126 RGDID:1587253 Length:229 Species:Rattus norvegicus


Alignment Length:185 Identity:48/185 - (25%)
Similarity:69/185 - (37%) Gaps:58/185 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 PQFRNPFDLLFDERTGAIN-----YNYIRPYLPNQMPKPDVFPSEELPDSLVMRRP--------- 97
            |.::|||...:.....|.|     |:...|.|.:.:.|    .:.:..|..|:..|         
  Rat    60 PLYQNPFASSYGLGADAYNLPCASYDQNIPGLCSDLAK----GACDKADEGVLHGPAEASFRIYP 120

  Fly    98 ---------RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHK 153
                     :|.|.|:|..|..|||:.|...||||..|..:::..|.|...|:||||:|||.:.|
  Rat   121 WMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 185

  Fly   154 IQSDQHKDQSYEGMPLSPGMKQSDGDPPSLQTLSLGGGATPNALTPSPTPSTPTA 208
               .:|||:|                            ..|.|:.....||..||
  Rat   186 ---KEHKDES----------------------------QAPTAVPEDAVPSVSTA 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bcdNP_788587.1 Homeobox 106..153 CDD:278475 20/46 (43%)
Hoxa7NP_001102703.2 Homeobox 133..185 CDD:278475 23/51 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.900

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