Protein Alignment bcd and gsx1

DIOPT Version :10

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001012251.1
• Gene: gsx1 / 449875
• ZFINID: ZDB-GENE-041008-135
• Length: 243
• Species: Danio rerio
• Alignment Length: 227
• Identity: 61/227 - (26%)
• Similarity: 90/227 - (39%)
• Gaps: 64/227 - (28%)

  Fly     5 PPDQNFYHHPLPHTHTHP-HPHSHPHPHS-----------------HPHPHHQHPQLQLP----P 47
            ||...:..||     :|| |..|....||                 ||.|    |.|.|.    |
Zfish    24 PPLFPYAVHP-----SHPLHSLSAGSCHSRKAGLLCFCPLCVTSQLHPSP----PALPLIKASFP 79

  Fly    48 QFRNPF--DLLFDER--TGAINYN-----YIRPYLPNQMPKPDVFPSEELPD-SLVMRRPRRTRT 102
            .|...:  ..|..:.  :..:|.|     |...|   .:|.|..|....:.: |..::..:|.||
Zfish    80 AFGTQYCHSALSRQHSTSSGVNLNSGSGLYQAAY---PVPDPRQFHCISIENSSSQLQSSKRMRT 141

  Fly   103 TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ--SDQHK----- 160
            .|||:|:.|||:.|....||:..|..:::..|.|...||||||:|||.:||.:  |..|:
Zfish   142 AFTSTQLLELEREFTSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKSGSHRTGAHN 206

  Fly   161 ------------DQSYEGMPLS-PGMKQSDGD 179
                        .:..:.:|:| |..::.|.|
Zfish   207 CKCSSSLSSARCSEEEDDLPMSPPSSEKEDAD 238

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeodomain	106..153	CDD:459649	20/46 (43%)
gsx1	NP_001012251.1	Homeodomain	137..193	CDD:459649	26/55 (47%)