DRSC/TRiP Functional Genomics Resources

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Protein Alignment bcd and hoxc8a

DIOPT Version :9

Sequence 1:NP_788587.1 Gene:bcd / 40830 FlyBaseID:FBgn0000166 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001005771.1 Gene:hoxc8a / 449648 ZFINID:ZDB-GENE-990415-114 Length:250 Species:Danio rerio


Alignment Length:190 Identity:50/190 - (26%)
Similarity:76/190 - (40%) Gaps:43/190 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 HPLPHTHTHPHP-HSHPHPHSHPHPHHQHPQLQLPPQFRNPFDLLFDERTGAINYNYIRPYLPNQ 76
            |.|.:.|....| ..||..|.....||....:..|...:||..|       |.:.:..:.|....
Zfish    36 HTLVYGHGAAAPGFQHPSHHVQDFFHHGTTGISNPGYQQNPCAL-------ACHGDATKFYGYEA 93

  Fly    77 MPKPDVFPSE------ELPD----------------------SLVM--RRP-----RRTRTTFTS 106
            :|:..::.::      :.||                      ||:.  .||     |..|.|::.
Zfish    94 LPRQPLYGTQQEATLAQYPDCKSSNSTNPGEGQGHLSQNSSPSLMFPWMRPHAPGRRNGRQTYSR 158

  Fly   107 SQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQSYEG 166
            .|..|||:.||...|||..|..::|..|:|...||||||:|||.:.|.::::.|.....|
Zfish   159 YQTLELEKEFLFNPYLTRKRRIEVSHALSLTERQVKIWFQNRRMKWKKENNKDKFPGQRG 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bcdNP_788587.1 Homeobox 106..153 CDD:278475 22/46 (48%)
hoxc8aNP_001005771.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 112..152 7/39 (18%)
Antp-type hexapeptide. /evidence=ECO:0000255 138..143 0/4 (0%)
Homeobox 153..205 CDD:278475 24/51 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 206..250 2/13 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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