Protein Alignment bcd and ro

DIOPT Version :10

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_524521.1
• Gene: ro / 43234
• FlyBaseID: FBgn0003267
• Length: 350
• Species: Drosophila melanogaster
• Alignment Length: 322
• Identity: 85/322 - (26%)
• Similarity: 111/322 - (34%)
• Gaps: 119/322 - (36%)

  Fly     6 PDQNFYHHPLPHTHTHPHPHSHPHPHSHPHP----HHQHPQLQLPPQFRNPFDLLFDERTGAINY 66
            |..:||.|...:.. ||......|.|.|.||    |.:...:..||..         ...||.|
  Fly   103 PAYDFYGHAKDYPQ-HPSQQHQQHHHHHHHPPQLVHQKLSYVSPPPAI---------AAGGAAN- 156

  Fly    67 NYIRPYLPNQMPKPDVFPSEE-----LPDSLVMR-----RPRRTRTTFTSSQIAELEQHFLQGRY 121
                |.||:..|..  |||:.     ....|..|     |.||.||||::.|...||..|.:..|
  Fly   157 ----PVLPHAFPAG--FPSDPHFSAGFSAFLARRRRKEGRQRRQRTTFSTEQTLRLEVEFHRNEY 215

  Fly   122 LTAPRLADLSAKLALGTAQVKIWFKNRR----RRHKIQSDQHKDQSYEGMPLSPGMKQS------ 176
            ::..|..:|:..|.|...|:||||:|||    |..|.|.|||    |....::.|...|
  Fly   216 ISRSRRFELAETLRLTETQIKIWFQNRRAKDKRIEKAQIDQH----YRNFVVANGFMSSIMGQAA 276

  Fly   177 DGDPPSLQT--LSLGGG-------ATPNALTPSPTPSTPTAHMTEHYSESFNAYYNYNGGHNHAQ 232
            ...||...|  :::|.|       |||.||   |..:|..|:..:...:
  Fly   277 TTMPPGGVTGGVAVGVGLNYYAAAATPAAL---PKDNTQDANFIDIDDQ---------------- 322

  Fly   233 ANRHMHMQYPSGGGPGPGSTNVNGGQFFQQQQVHNHQQQLHHQGNHVPHQMQQQQQQAQQQQ 294
                                       ||:||                   ||:|||.||||
  Fly   323 ---------------------------FQRQQ-------------------QQKQQQQQQQQ 338

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeodomain	106..153	CDD:459649	18/50 (36%)
ro	NP_524521.1	Homeodomain	196..248	CDD:459649	20/51 (39%)