Protein Alignment bcd and pb

DIOPT Version :10

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_476669.3
• Gene: pb / 40826
• FlyBaseID: FBgn0051481
• Length: 782
• Species: Drosophila melanogaster
• Alignment Length: 591
• Identity: 122/591 - (20%)
• Similarity: 163/591 - (27%)
• Gaps: 294/591 - (49%)

  Fly    97 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS----- 156
            |||.||.:|::|:.|||:.|...:||..||..:::|.|.|...|||:||:|||.:||.|:
  Fly   198 PRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEIAASLDLTERQVKVWFQNRRMKHKRQTLSKTD 262

  Fly   157 -----------DQHKDQSYEGMPLSPGMKQSDGDPPSLQTLSLG---------------GGATPN 195
                       |...|.:........|.:....|.|...:.|.|               |..|||
  Fly   263 DEDNKDSLKGDDDQSDSNSNSKKSCQGCELPSDDIPDSTSNSRGHNNNTPSATNNNPSAGNLTPN 327

  Fly   196 A---------------------------------------------------------------- 196
            :
  Fly   328 SSLETGISSNLMGSTTVSASNVISADSSVASSVSLDEDIEESSPIKVKKKDDGQVIKKEAVSTSS 392

  Fly   197 ---------LTPS----------------PTP---------------STPTAHMTEHYSES---- 217
                     .|||                ||.               :|||. :::..|.:
  Fly   393 KASPFGYENSTPSLVSFRRDSDASAVGNAPTSKAVGKKRFQSAANAIATPTP-LSDSNSGNGSGG 456

  Fly   218 ------FNAYY---------------------------NYNG-------------GHNHAQANRH 236
                  |..||                           :|.|             .||..||
  Fly   457 GPAGGYFPGYYPSPKQQQQVQQQQLHPQQQQLPQQQPQDYYGKYDIEFAASPHHNPHNKQQA--- 518

  Fly   237 MHMQYPSGGGPGPGSTNVNGGQFFQQQQVH--------------NHQQQLHHQGNHVPHQMQQQ- 286
            :|.:|.|   |.|.|.|.:.....|||..|              |||||.||...|  ||.||.
  Fly   519 LHGEYLS---PKPSSANFHQNSQQQQQNDHFYYNYNDTNGTPYLNHQQQHHHHAQH--HQQQQHH 578

  Fly   287 ----------------------------QQQAQQQQYHHFDFQQKQASACRVLVKDEPEADYNFN 323
                                        |||||..|:....|||:|           |......|
  Fly   579 QNHVADFEGPVNGPSNFNNGAYYDNMSFQQQAQAHQHQTVVFQQQQ-----------PHQPAAIN 632

  Fly   324 SSYYMRSGMSGATASASAVAR---------GAASPGSEVYE-------PLT------PKNDESPS 366
            ..:....| :|.|.||..:..         |||..|...||       |.|      |.:.:.|:
  Fly   633 HQHMHHLG-NGETYSALGLQMENCEGYNNFGAAGTGGGYYEAGQQPPIPATHGHGHHPHHVQVPA 696

  Fly   367 LC---------------GIGIGGPCA----IAVGETEAADDMDDGTSKKTTLQILEPLKGLDKSC 412
            ..               |:|:|.|.:    .|:....|......|.:..|... ...:.||:.|
  Fly   697 QAHAPIHAHHNSAAIPGGVGVGPPPSHIHGFAINGGPAVQGQAFGNNGSTAAG-TAAISGLENS- 759

  Fly   413 DDGSSD 418
              .|||
  Fly   760 --NSSD 763

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeodomain	106..153	CDD:459649	20/46 (43%)
pb	NP_476669.3	Homeodomain	199..255	CDD:459649	26/55 (47%)