Protein Alignment bcd and Cdx1

DIOPT Version :10

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001406562.1
• Gene: Cdx1 / 364883
• RGDID: 621233
• Length: 273
• Species: Rattus norvegicus
• Alignment Length: 255
• Identity: 71/255 - (27%)
• Similarity: 92/255 - (36%)
• Gaps: 82/255 - (32%)

  Fly    16 PHTHTHPHPHSHPHPHSHPH---PHHQHPQLQLPPQFRNPFDLLFDERTGAINYNYIRPYLPNQM 77
            |.|:..|.|  .|.|..:|.   ..|..|....||.:..||....|:...|....   |.:|...
  Rat    27 PPTYAPPGP--APAPPQYPDFAGYTHVEPAPAPPPTWAAPFPAPKDDWAAAYGPG---PAVPAAS 86

  Fly    78 PKPDVF-PSEE--------------LPDSL----------VMRRP-----RR------------T 100
            |.|..| |..:              |..||          |.||.     ||            |
  Rat    87 PAPLAFGPPPDFSPVPAPPGPGPGILAQSLGGPGAPSSPGVQRRTPYEWMRRNVAAAGGGGSGKT 151

  Fly   101 RT------TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRR-RRHKI-QSD 157
            ||      .:|..|..|||:.|...||:|..|.::|:|.|.|...||||||:||| :..|: :..
  Rat   152 RTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKK 216

  Fly   158 QHKDQSYEGMPLSPGMKQSDGDPPSLQTLSLGGGATPNAL--------------TPSPTP 203
            |.:.|..:..|:          ||:...|.|.|..||:..              ||||.|
  Rat   217 QQQQQQQQQQPM----------PPTQLPLPLDGTPTPSGPPLGSLCPTNAGLLGTPSPVP 266

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeodomain	106..153	CDD:459649	22/47 (47%)
Cdx1	NP_001406562.1	Caudal_act	13..140	CDD:461413	29/117 (25%)
		Homeodomain	156..211	CDD:459649	23/54 (43%)