Protein Alignment bcd and scro

DIOPT Version :10

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Alignment Length: 244
• Identity: 67/244 - (27%)
• Similarity: 91/244 - (37%)
• Gaps: 63/244 - (25%)

  Fly    79 KPDVFPSEELPDSLVMRRPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKI 143
            ||..||       |..||.|  |..||.:|:.|||:.|.|.|||:||....|::.:.|...||||
  Fly   244 KPLQFP-------LAQRRKR--RVLFTQAQVYELERRFKQQRYLSAPEREHLASLIHLTPTQVKI 299

  Fly   144 WFKNRRRRHKIQS--------DQHKDQS------------YEGMPLSPGMKQSDGDPPSLQTLSL 188
            ||:|.|.:.|.|:        :||...:            .:|.|.|.....|........:.|.
  Fly   300 WFQNHRYKCKRQAKEKAMAEQNQHNQPASSPRRVAVPVLVKDGKPCSGNNSSSQSQQHGTNSTSA 364

  Fly   189 G--------GGATPNALTPSP---------TPSTPTAHMTEHYSESFNAYYNYNGGHNHAQANRH 236
            |        |.|....::.:.         |...|.:|..: .|.|..|.|...||.|.|.
  Fly   365 GNNTGSANNGNANSGIVSVTANVSGGLNLITGDAPNSHSPD-TSSSLLASYGTVGGSNVAM---- 424

  Fly   237 MHMQYPSGGGPGPGSTNV---NGGQFFQQQQVHNHQQQLHHQGNHVPHQ 282
              :|.|........|..:   |...|..    :.||||.   |.::|.|
  Fly   425 --LQQPCNNTLMSNSLAMAYRNQNNFIS----NGHQQQC---GGYLPLQ 464

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeodomain	106..153	CDD:459649	21/46 (46%)
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	26/57 (46%)