DRSC/TRiP Functional Genomics Resources

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Protein Alignment bcd and Hoxc5

DIOPT Version :9

Sequence 1:NP_788587.1 Gene:bcd / 40830 FlyBaseID:FBgn0000166 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001101586.1 Gene:Hoxc5 / 315341 RGDID:1307584 Length:222 Species:Rattus norvegicus


Alignment Length:194 Identity:51/194 - (26%)
Similarity:72/194 - (37%) Gaps:52/194 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PPPDQNFYHHPLPHTHTHPHPHSHPHPHSHPHPHHQHPQLQLPPQFRNPFDLLFDERTGAINYNY 68
            ||...|..|......:...|| ..|...:...|.|...:.:..|  .||         |..:...
  Rat    51 PPAPSNSLHGVDMAANPRAHP-DRPACSAAAAPGHALGRDEAAP--LNP---------GMYSQKA 103

  Fly    69 IRPYLP----------------------NQMP-KPDVFP-------SEELPDSLVMRRPRRTRTT 103
            .||.|.                      :|.| .|.::|       |.|...       :|:||:
  Rat   104 ARPALEERAKSSGEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDG-------KRSRTS 161

  Fly   104 FTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQSYEGM 167
            :|..|..|||:.|...||||..|..:::..|.|...|:||||:|||.:.|..|   |.:|.|.:
  Rat   162 YTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDS---KMKSKEAL 222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bcdNP_788587.1 Homeobox 106..153 CDD:278475 20/46 (43%)
Hoxc5NP_001101586.1 COG5373 65..>142 CDD:227665 15/88 (17%)
Homeobox 158..212 CDD:395001 23/53 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.900

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