DRSC/TRiP Functional Genomics Resources

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Protein Alignment bcd and hoxb8b

DIOPT Version :9

Sequence 1:NP_788587.1 Gene:bcd / 40830 FlyBaseID:FBgn0000166 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_571256.1 Gene:hoxb8b / 30420 ZFINID:ZDB-GENE-980526-291 Length:247 Species:Danio rerio


Alignment Length:203 Identity:63/203 - (31%)
Similarity:82/203 - (40%) Gaps:44/203 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PDQNFYHHPLPHTHTHPHPHSHPHPHSHPHPHHQ------HPQLQLPPQFRNPFDLLFDERTGAI 64
            ||  ||||   .|.:.||......|.:..:|...      ...||....|..| |..|.: .|..
Zfish    56 PD--FYHH---GTSSFPHASYQQTPCAVAYPGDATGNILGQDGLQKQSFFGAP-DSDFTQ-FGDC 113

  Fly    65 NYNY--IRPYLPNQMP-KPDVFPSEELPDSLVMRRP-----RRTRTTFTSSQIAELEQHFLQGRY 121
            |...  ||..|.:..| ...:||         ..||     ||.|.|::..|..|||:.||...|
Zfish   114 NLKVSGIRDDLESAEPCTAQLFP---------WMRPQATGRRRGRQTYSRYQTLELEKEFLFNPY 169

  Fly   122 LTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQS------------YEGMPLSPGMK 174
            ||..|..::|..|||...||||||:|||.:.|.:.::.|..|            .||..:|.  |
Zfish   170 LTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEHNKDKFPSSKAEQEEIERERQEGSQVSE--K 232

  Fly   175 QSDGDPPS 182
            .:.|:..|
Zfish   233 HTSGEEDS 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bcdNP_788587.1 Homeobox 106..153 CDD:278475 23/46 (50%)
hoxb8bNP_571256.1 Antp-type hexapeptide 134..139 2/13 (15%)
Homeobox 149..201 CDD:278475 25/51 (49%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..247 9/42 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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