Protein Alignment bcd and Hoxb1

DIOPT Version :9

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: XP_220896.4
• Gene: Hoxb1 / 303491
• RGDID: 1310298
• Length: 297
• Species: Rattus norvegicus
• Alignment Length: 231
• Identity: 58/231 - (25%)
• Similarity: 92/231 - (39%)
• Gaps: 54/231 - (23%)

  Fly     1 MAQPPPDQNFYHHP--------LPHTHTHPHPHSHPHPHSHPHPHHQHPQLQLPPQFRNPFDLLF 57
            |.|...|..::|..        ||.::......|.|:|  .|.|.:...|..   .|.:.:|||.
  Rat    98 MGQSEGDGGYFHPSSYGAQLGGLPDSYGAGGVGSGPYP--PPQPPYGTEQTS---NFASAYDLLS 157

  Fly    58 DERTGAINYNYIRPYLPNQMPKPDVFPSEELPDSLVMRRPRRT--------------RTTFTSSQ 108
            :::..:.:            .:|....:.......|.|.|.:|              ||.||:.|
  Rat   158 EDKESSCS------------SEPSSLTARTFDWMKVKRNPPKTAKVSELGLGTPGGLRTNFTTRQ 210

  Fly   109 IAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQSYEGMPLSPGM 173
            :.|||:.|...:||:..|..:::|.|.|...||||||:|||.:       .|.:..||..:..|
  Rat   211 LTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMK-------QKKREREGGRVPAG- 267

  Fly   174 KQSDGDPPSLQTLSLGGGATPNALT-PSPTPSTPTA 208
                  ||.....:.|..:..:|.| |..:||:.|:
  Rat   268 ------PPGCPKEAAGEASDQSACTSPEASPSSITS 297

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeobox	106..153	CDD:278475	20/46 (43%)
Hoxb1	XP_220896.4	Homeobox	203..255	CDD:278475	24/58 (41%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900