Protein Alignment bcd and hoxc4a

DIOPT Version :9

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_571197.1
• Gene: hoxc4a / 30345
• ZFINID: ZDB-GENE-990415-112
• Length: 268
• Species: Danio rerio
• Alignment Length: 232
• Identity: 59/232 - (25%)
• Similarity: 92/232 - (39%)
• Gaps: 58/232 - (25%)

  Fly     7 DQNFYHHPLPHTHTHPHPHSH----------PHP-----HSHPHPHH----------QHPQLQLP 46
            |..:.||   |...:|...|:          |.|     |..||..|          :.|.|.|.
Zfish    42 DSGYQHH---HQELYPPRASYQERQYNCASIPEPDTQRGHGLPHAGHLLGKGQSASCEPPPLPLS 103

  Fly    47 PQFRNPFDLLFDERTGAINYNYIRPYLPN---QMPKPDVFP-SEELPDSLVM-----RRPRRTRT 102
            |...:......::.|         |..||   ...:|.|:| .:::..|.|.     ..|:|:||
Zfish   104 PATPSAASSACNQAT---------PEHPNSSASAKQPVVYPWMKKIHVSTVNSSYNGAEPKRSRT 159

  Fly   103 TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRR----HKIQSDQHKDQS 163
            .:|..|:.|||:.|...||||..|..:::..|.|...|:||||:|||.:    |::.:.:.:..|
Zfish   160 AYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLVLSERQIKIWFQNRRMKWKKDHRLPNTKVRSSS 224

  Fly   164 YEGMPLSPGMKQSDGDPPSLQTLSLGGGATPNALTPS 200
            ..|:        |.|...|.....:...:|.|.::.|
Zfish   225 STGI--------SSGSNTSSAAGVVAAASTTNTMSAS 253

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeobox	106..153	CDD:278475	20/50 (40%)
hoxc4a	NP_571197.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	70..129		14/67 (21%)
		Antp-type hexapeptide	133..138		2/4 (50%)
		Homeobox	157..210	CDD:278475	23/52 (44%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	212..268		9/50 (18%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000007
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.900