DRSC/TRiP Functional Genomics Resources

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Protein Alignment bcd and hoxb4a

DIOPT Version :9

Sequence 1:NP_788587.1 Gene:bcd / 40830 FlyBaseID:FBgn0000166 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_571193.1 Gene:hoxb4a / 30340 ZFINID:ZDB-GENE-990415-105 Length:246 Species:Danio rerio


Alignment Length:217 Identity:56/217 - (25%)
Similarity:85/217 - (39%) Gaps:53/217 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DQNFYHHPLPHTHT----HPH--------------PHSHPHPH---SHPHPHHQH---------- 40
            |.:|.|..:.|..:    .|:              |..|..|.   |.|.|...|          
Zfish    43 DPSFQHESIYHQRSGCADPPYSSCQGPGQPAAVISPRGHVLPTTALSTPLPEPSHHCDSVTPSPP 107

  Fly    41 PQLQLPPQFRNPFDLLFDERTGAINYNYIRPYLPNQMPKPDVFPSEELPDSLVMRRPRRTRTTFT 105
            |.....|..:|...:  ..|...:.|.:::....| :..|:....|          |:|:||.:|
Zfish   108 PACGQTPTSQNTSTV--SSRKDPVVYPWMKKVHVN-IVSPNYSGGE----------PKRSRTAYT 159

  Fly   106 SSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRR----HKIQSDQHKDQS--- 163
            ..|:.|||:.|...||||..|..:::..|.|...|:||||:|||.:    ||:.:.:.:..|   
Zfish   160 RQQVLELEKEFHYNRYLTRRRRVEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKIRSNSAST 224

  Fly   164 -YEGMP-LSPGMKQSDGDPPSL 183
             ..|.| |.....::.|.||||
Zfish   225 NSSGCPTLCSNQSRASGPPPSL 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bcdNP_788587.1 Homeobox 106..153 CDD:278475 20/50 (40%)
hoxb4aNP_571193.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 23..125 15/83 (18%)
Antp-type hexapeptide 130..135 1/4 (25%)
Homeobox 154..207 CDD:278475 23/52 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 210..246 9/35 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.900

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