DRSC/TRiP Functional Genomics Resources

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Protein Alignment bcd and hoxb3a

DIOPT Version :9

Sequence 1:NP_788587.1 Gene:bcd / 40830 FlyBaseID:FBgn0000166 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_571192.2 Gene:hoxb3a / 30339 ZFINID:ZDB-GENE-990415-104 Length:417 Species:Danio rerio


Alignment Length:404 Identity:95/404 - (23%)
Similarity:131/404 - (32%) Gaps:131/404 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PPPDQNFYHHPLPHTHTHPHPHSHPHPHSHPHPHHQHPQLQLPPQFRNPFDLLFDERTG------ 62
            ||..|        |..|.....|...| |.|..||..||:. |||  |..::.....|.      
Zfish    58 PPQPQ--------HAKTKELNGSCMRP-SLPPEHHPPPQVS-PPQ--NTVNVAATNATQQPGGSG 110

  Fly    63 --------------------AINYNYIRPYLP------------NQMPKPDVFPSEEL------P 89
                                |.|....:...|            |..|......:|..      |
Zfish   111 GGGVAGSGGTSKSSSKSSSMATNPTLTKQIFPWMKESRQNTKQKNSSPSASSANAESSGGEKSPP 175

  Fly    90 DSLVMRRPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKI 154
            .|..   .:|.||.:||:|:.|||:.|...|||..||..:::..|.|...|:||||:|||.::| 
Zfish   176 GSAA---SKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYK- 236

  Fly   155 QSDQHKDQSYEGMPLSPGMKQSDGDPPSLQTLSLGGGATPNALTPSPTPSTPTAHMTEHYSESFN 219
                 |||..:|:..|.|.....|.||.....|.|...:.:::.....||.|             
Zfish   237 -----KDQKSKGIGSSSGGPSPTGSPPLPMQSSAGFMNSMHSMGSYDAPSPP------------- 283

  Fly   220 AYYNYNGGHNHAQANRHMHMQYPSGGGP------------GPGSTNVNGGQF----FQQQQVH-- 266
               ::|..|.:|.|....: |.|..|.|            .|.....|.|.:    .|...|:  
Zfish   284 ---SFNKPHQNAYAMSTAY-QNPMKGCPPQQKYGNTPPDYDPHGLQGNSGNYGTPNMQGSPVYVG 344

  Fly   267 -NHQQQLHHQG------NHVPHQMQQQ-------QQQAQQQQYHHFDFQQKQASACRVLVKDEPE 317
             |:...:...|      ||:||.....       |..|.|   ||        ..|      :|.
Zfish   345 GNYVDAMPATGPSMYGLNHLPHHQSASMDYNGATQMSANQ---HH--------GPC------DPH 392

  Fly   318 ADYNFNSSYYMRSG 331
            ..|...|:::...|
Zfish   393 PTYTDLSAHHPSQG 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bcdNP_788587.1 Homeobox 106..153 CDD:278475 21/46 (46%)
hoxb3aNP_571192.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 51..135 20/88 (23%)
Antp-type hexapeptide 140..145 1/4 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 147..184 6/39 (15%)
Homeobox 184..236 CDD:278475 24/51 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 237..290 15/68 (22%)
DUF4074 353..415 CDD:290032 15/71 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 381..417 9/43 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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