DRSC/TRiP Functional Genomics Resources

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Protein Alignment bcd and hoxb2a

DIOPT Version :9

Sequence 1:NP_788587.1 Gene:bcd / 40830 FlyBaseID:FBgn0000166 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_571191.1 Gene:hoxb2a / 30338 ZFINID:ZDB-GENE-990415-103 Length:390 Species:Danio rerio


Alignment Length:257 Identity:71/257 - (27%)
Similarity:104/257 - (40%) Gaps:66/257 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AQPPPDQNFYHHPLPH----THTHPHPHSHPHPHSH----------PHPHHQHP-QLQLPPQFRN 51
            |.|||    :.|.:|.    |.....|.|.....|:          |..|.|.| .|.......:
Zfish    42 AIPPP----FEHTIPSLSPCTGNQARPRSQKRTASNGLQLRTQTAPPTQHQQGPAPLSGGAPLAH 102

  Fly    52 PFDLLFDERTGAINYNYIRPYLPNQMPKPD-------VFPSE----------ELPDSLV-----M 94
            .|..:.::::.            .:.|||.       ..||:          |.|..:.     :
Zfish   103 EFPWMKEKKSS------------KKCPKPGATAAAAAASPSQASSGYTTAGLESPTEIQGGLDNV 155

  Fly    95 RRPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 159
            ...||.||.:|::|:.|||:.|...:||..||..:::|.|.|...|||:||:|||.:||.|:..|
Zfish   156 SGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTTHH 220

  Fly   160 KDQSYEGMP----LSPGMKQSDGDPPSLQTLSLGGGATPNALTPSPTPSTPTAHMTEHYSES 217
            :| ..||.|    |..|...|  .|.|.|:|.:.|.   .:..||.:.:.||   |..|:.|
Zfish   221 RD-GQEGEPSGFDLLEGTDAS--SPYSSQSLEVSGS---GSAAPSESETCPT---TAAYTNS 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bcdNP_788587.1 Homeobox 106..153 CDD:278475 20/46 (43%)
hoxb2aNP_571191.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 40..73 9/34 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 81..100 5/18 (28%)
Antp-type hexapeptide 103..108 1/4 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 108..155 7/58 (12%)
Homeobox 162..214 CDD:278475 23/51 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 211..338 23/72 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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