Protein Alignment bcd and hoxd4a

DIOPT Version :10

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001119917.1
• Gene: hoxd4a / 30329
• ZFINID: ZDB-GENE-980526-214
• Length: 256
• Species: Danio rerio
• Alignment Length: 210
• Identity: 56/210 - (26%)
• Similarity: 81/210 - (38%)
• Gaps: 45/210 - (21%)

  Fly     4 PPPDQNFYHHPLPHTHTHPHPHSHPHPHS-------HPHPHHQHPQLQLPPQF-----RNPFDLL 56
            |..|.:|.|   |..::..:....|:..|       .|..|.| .|...|..|     :.|...:
Zfish    59 PSQDTDFQH---PGIYSRSNYSEQPYSCSTVQGSSVQPRGHVQ-DQASTPSPFPAQTEQCPAVQI 119

  Fly    57 FDERTGAINYN-YIRPYLPNQMP---------------KPDVFPSEELPDSLVMRRPRRTRTTFT 105
            ...|||....| ..:..:|.:.|               .||....|          |:|:||.:|
Zfish   120 SGSRTGGQQQNTKTQNGIPTKQPAVVYPWMKKVHVTTVNPDYTGPE----------PKRSRTAYT 174

  Fly   106 SSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQSYEGMPLS 170
            ..|:.|||:.|...||||..|..:::..|.|...|:||||:|||.:.|   ..||..:.:|...|
Zfish   175 RQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWK---KDHKLPNTKGRSAS 236

  Fly   171 PGMKQSDGDPPSLQT 185
            .|.:.:.......||
Zfish   237 VGNQHAQHAQKDSQT 251

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeodomain	106..153	CDD:459649	20/46 (43%)
hoxd4a	NP_001119917.1	Homeodomain	167..223	CDD:459649	25/58 (43%)