DRSC/TRiP Functional Genomics Resources

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Protein Alignment bcd and Gsx1

DIOPT Version :9

Sequence 1:NP_788587.1 Gene:bcd / 40830 FlyBaseID:FBgn0000166 Length:494 Species:Drosophila melanogaster
Sequence 2:NP_001178592.1 Gene:Gsx1 / 288457 RGDID:1310020 Length:261 Species:Rattus norvegicus


Alignment Length:138 Identity:45/138 - (32%)
Similarity:63/138 - (45%) Gaps:22/138 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 MPKPDVF-------PSEELPDSLVMRRPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKL 134
            :|.|..|       .|.:||.|      :|.||.|||:|:.|||:.|....||:..|..:::..|
  Rat   125 LPDPRQFHCISVDSSSNQLPSS------KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYL 183

  Fly   135 ALGTAQVKIWFKNRRRRHKIQSDQHKDQSYEGMPLSPGMKQSDGDPPSLQTLSLGG---GATPNA 196
            .|...||||||:|||.:||   .:.|..::.|   ..|.....|.|...:..||..   ....:.
  Rat   184 NLSEKQVKIWFQNRRVKHK---KEGKGSNHRG---GAGAGAGGGAPQGCKCSSLSSAKCSEDDDE 242

  Fly   197 LTPSPTPS 204
            |..||:.|
  Rat   243 LPMSPSSS 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bcdNP_788587.1 Homeobox 106..153 CDD:278475 20/46 (43%)
Gsx1NP_001178592.1 Homeobox 150..202 CDD:278475 24/51 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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