Protein Alignment bcd and Hoxd3

DIOPT Version :9

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_001257967.1
• Gene: Hoxd3 / 288152
• RGDID: 1588601
• Length: 432
• Species: Rattus norvegicus
• Alignment Length: 232
• Identity: 65/232 - (28%)
• Similarity: 92/232 - (39%)
• Gaps: 67/232 - (28%)

  Fly    98 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQ 162
            :|.||.:||:|:.|||:.|...|||..||..:::..|.|...|:||||:|||.::|      |||
  Rat   195 KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK------KDQ 253

  Fly   163 SYEGMPLSPGMKQSDGDPPSLQTLSLGGGATPNA----LTPSP-----TPSTP------------ 206
            ..:|:..||..:..:..||      |||.|...|    |.|.|     .||.|
  Rat   254 KAKGILHSPAGQSPERSPP------LGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGL 312

  Fly   207 ---TAHMT-------EHYSESFNAYYNYNGGHNHAQANRHMHMQYPSG---------GGP----- 247
               ||.::       .:.:..|..:...:.|...|.||......|..|         .||
  Rat   313 AAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGGNFVDSMAPASGPVFNLG 377

  Fly   248 ---GPGSTNVNGGQFFQQQQVHNHQQQLHHQGNHVPH 281
               .|.|.:|:   :....|:..:    ||.|...||
  Rat   378 HLSHPSSASVD---YSCAAQIPGN----HHHGPCDPH 407

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeobox	106..153	CDD:278475	21/46 (46%)
Hoxd3	NP_001257967.1	Homeobox	198..251	CDD:395001	25/58 (43%)
		DUF4074	369..430	CDD:404218	11/46 (24%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000007
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.900