Protein Alignment bcd and Hoxc6

DIOPT Version :9

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: XP_038936324.1
• Gene: Hoxc6 / 252885
• RGDID: 620626
• Length: 243
• Species: Rattus norvegicus
• Alignment Length: 164
• Identity: 43/164 - (26%)
• Similarity: 61/164 - (37%)
• Gaps: 52/164 - (31%)

  Fly    36 PHHQHPQLQLPP--QFRNPFDLLFDERTGAINYNYIRPYLPNQMPKPDVFPSEELPDSLVMRRPR 98
            |..|...:|:.|  |..|...:.|...:..:.|...|                           |
  Rat   113 PQDQKASIQIYPWMQRMNSHSVCFVPGSLGVGYGADR---------------------------R 150

  Fly    99 RTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQS 163
            |.|..::..|..|||:.|...||||..|..:::..|.|...|:||||:|||.:.|.:|:...
  Rat   151 RGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTS--- 212

  Fly   164 YEGMPLSPGMKQSDGDPPSLQTLSLGGGATPNAL 197
                .||.|                |||||.::|
  Rat   213 ----TLSGG----------------GGGATADSL 226

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeobox	106..153	CDD:278475	20/46 (43%)
Hoxc6	XP_038936324.1	Homeobox	153..206	CDD:395001	21/52 (40%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000007
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.900