Protein Alignment bcd and gbx2

DIOPT Version :10

• Sequence 1: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Sequence 2: NP_694496.1
• Gene: gbx2 / 245948
• ZFINID: ZDB-GENE-020509-2
• Length: 342
• Species: Danio rerio
• Alignment Length: 303
• Identity: 60/303 - (19%)
• Similarity: 89/303 - (29%)
• Gaps: 121/303 - (39%)

  Fly     4 PPPDQNFYHHPLPHTHTHPHPHSHPHP----------------------------HSHPHPHHQH 40
            |||........||.||.|     ||.|                            .|.|...||.
Zfish    60 PPPPPTLPQSALPTTHPH-----HPIPGLPSSFCSSLAQGMALTSTLMATLPGGFSSSPSQQHQD 119

  Fly    41 PQLQLPPQ-----FRNPFDLLFDERTG------------------AINYNYIRPYLPNQMPKPDV 82
            ...:|..|     |....|:..|...|                  :::.:.:|.:..:...:.|.
Zfish   120 AARKLGSQSIHAMFDKSQDIRLDGEDGKTFATKDSTSIPSFHDSQSVHTSTVRGHSKDDSKEDDC 184

  Fly    83 FPSEEL---------------PDSLVMRRP---------------------------RRTRTTFT 105
            ...:|.               |.:.:.::.                           ||.||.||
Zfish   185 HRKDESFSMDSDLDYSSDDNGPGNAMCQKEDGDGSGGLDDGVHGGNGAGNTTSTGKNRRRRTAFT 249

  Fly   106 SSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQSYEGMPLS 170
            |.|:.|||:.|...:||:....:.::..|.|...||||||:|||.:.|              .:.
Zfish   250 SEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWK--------------RVK 300

  Fly   171 PGMKQSDGDPPSLQTLSLGGGATPNALTPSPTPSTPTAHMTEH 213
            .|...|....||         ..|..:.|.|...:..|..::|
Zfish   301 AGNVNSKTGEPS---------RNPKIVVPIPVHVSRFAIRSQH 334

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bcd	NP_788587.1	Homeodomain	106..153	CDD:459649	19/46 (41%)
gbx2	NP_694496.1	Homeodomain	242..298	CDD:459649	26/69 (38%)